Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0951 and Dshi_0952 are separated by 493 nucleotides Dshi_0952 and Dshi_0953 are separated by 35 nucleotides
Dshi_0951: Dshi_0951 - hypothetical protein (RefSeq), at 975,412 to 975,882
_0951
Dshi_0952: Dshi_0952 - tryptophan synthase, alpha subunit (RefSeq), at 976,376 to 977,194
_0952
Dshi_0953: Dshi_0953 - MATE efflux family protein (RefSeq), at 977,230 to 978,582
_0953
Position (kb) 976
977
978 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 976.340 kb on - strand at 977.319 kb on - strand at 977.350 kb on - strand at 977.424 kb on + strand, within Dshi_0953 at 977.454 kb on + strand, within Dshi_0953 at 977.460 kb on + strand, within Dshi_0953 at 977.490 kb on + strand, within Dshi_0953 at 977.497 kb on + strand, within Dshi_0953 at 977.512 kb on - strand, within Dshi_0953 at 977.522 kb on - strand, within Dshi_0953 at 977.543 kb on - strand, within Dshi_0953 at 977.660 kb on - strand, within Dshi_0953 at 977.760 kb on + strand, within Dshi_0953 at 977.783 kb on - strand, within Dshi_0953 at 977.788 kb on - strand, within Dshi_0953 at 977.791 kb on + strand, within Dshi_0953 at 977.822 kb on - strand, within Dshi_0953 at 977.832 kb on - strand, within Dshi_0953 at 977.955 kb on + strand, within Dshi_0953 at 977.994 kb on - strand, within Dshi_0953 at 978.006 kb on + strand, within Dshi_0953 at 978.020 kb on + strand, within Dshi_0953 at 978.057 kb on - strand, within Dshi_0953 at 978.080 kb on + strand, within Dshi_0953
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 976,340 - +0.9 977,319 - +0.8 977,350 - -0.6 977,424 + Dshi_0953 0.14 +2.7 977,454 + Dshi_0953 0.17 -1.9 977,460 + Dshi_0953 0.17 -1.2 977,490 + Dshi_0953 0.19 -1.7 977,497 + Dshi_0953 0.20 +0.4 977,512 - Dshi_0953 0.21 -2.6 977,522 - Dshi_0953 0.22 -0.7 977,543 - Dshi_0953 0.23 -1.7 977,660 - Dshi_0953 0.32 -1.9 977,760 + Dshi_0953 0.39 +2.7 977,783 - Dshi_0953 0.41 +0.5 977,788 - Dshi_0953 0.41 -1.0 977,791 + Dshi_0953 0.41 +0.1 977,822 - Dshi_0953 0.44 +2.2 977,832 - Dshi_0953 0.44 -0.6 977,955 + Dshi_0953 0.54 +0.4 977,994 - Dshi_0953 0.56 +0.1 978,006 + Dshi_0953 0.57 +1.0 978,020 + Dshi_0953 0.58 -1.2 978,057 - Dshi_0953 0.61 -0.6 978,080 + Dshi_0953 0.63 -4.0
Or see this region's nucleotide sequence