Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0915 and Dshi_0916 are separated by 271 nucleotides Dshi_0916 and Dshi_0917 are separated by 10 nucleotides
Dshi_0915: Dshi_0915 - phosphomethylpyrimidine kinase (RefSeq), at 936,787 to 937,584
_0915
Dshi_0916: Dshi_0916 - efflux transporter, RND family, MFP subunit (RefSeq), at 937,856 to 939,046
_0916
Dshi_0917: Dshi_0917 - acriflavin resistance protein (RefSeq), at 939,057 to 942,221
_0917
Position (kb) 937
938
939
940 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 936.885 kb on - strand, within Dshi_0915 at 936.914 kb on + strand, within Dshi_0915 at 937.069 kb on + strand, within Dshi_0915 at 937.166 kb on + strand, within Dshi_0915 at 937.176 kb on + strand, within Dshi_0915 at 937.209 kb on - strand, within Dshi_0915 at 937.335 kb on + strand, within Dshi_0915 at 937.348 kb on - strand, within Dshi_0915 at 937.477 kb on + strand, within Dshi_0915 at 937.621 kb on - strand at 937.785 kb on - strand at 937.826 kb on + strand at 937.852 kb on + strand at 937.907 kb on - strand at 937.968 kb on - strand at 938.014 kb on + strand, within Dshi_0916 at 938.231 kb on + strand, within Dshi_0916 at 938.316 kb on - strand, within Dshi_0916 at 938.319 kb on + strand, within Dshi_0916 at 938.670 kb on - strand, within Dshi_0916 at 938.712 kb on - strand, within Dshi_0916 at 938.718 kb on + strand, within Dshi_0916 at 938.783 kb on + strand, within Dshi_0916 at 938.784 kb on - strand, within Dshi_0916 at 938.791 kb on + strand, within Dshi_0916 at 938.854 kb on + strand, within Dshi_0916 at 938.862 kb on - strand, within Dshi_0916 at 938.862 kb on - strand, within Dshi_0916 at 938.876 kb on + strand, within Dshi_0916 at 938.894 kb on - strand, within Dshi_0916 at 938.894 kb on - strand, within Dshi_0916 at 939.042 kb on + strand at 939.055 kb on + strand at 939.184 kb on - strand at 939.214 kb on + strand at 939.265 kb on - strand at 939.538 kb on - strand, within Dshi_0917 at 939.563 kb on + strand, within Dshi_0917 at 939.571 kb on - strand, within Dshi_0917 at 939.641 kb on + strand, within Dshi_0917 at 939.660 kb on - strand, within Dshi_0917 at 939.708 kb on + strand, within Dshi_0917 at 939.757 kb on - strand, within Dshi_0917 at 940.024 kb on + strand, within Dshi_0917
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 936,885 - Dshi_0915 0.12 -1.1 936,914 + Dshi_0915 0.16 +0.4 937,069 + Dshi_0915 0.35 +2.0 937,166 + Dshi_0915 0.47 +0.9 937,176 + Dshi_0915 0.49 -2.4 937,209 - Dshi_0915 0.53 +0.4 937,335 + Dshi_0915 0.69 +0.4 937,348 - Dshi_0915 0.70 +3.0 937,477 + Dshi_0915 0.86 +3.0 937,621 - +0.9 937,785 - +2.4 937,826 + +3.4 937,852 + +1.6 937,907 - +0.4 937,968 - -0.6 938,014 + Dshi_0916 0.13 +2.0 938,231 + Dshi_0916 0.31 -1.6 938,316 - Dshi_0916 0.39 +0.4 938,319 + Dshi_0916 0.39 -2.4 938,670 - Dshi_0916 0.68 +2.0 938,712 - Dshi_0916 0.72 -2.7 938,718 + Dshi_0916 0.72 +0.4 938,783 + Dshi_0916 0.78 +0.4 938,784 - Dshi_0916 0.78 -1.6 938,791 + Dshi_0916 0.79 +1.8 938,854 + Dshi_0916 0.84 -0.1 938,862 - Dshi_0916 0.84 +2.4 938,862 - Dshi_0916 0.84 -0.5 938,876 + Dshi_0916 0.86 -2.1 938,894 - Dshi_0916 0.87 -1.1 938,894 - Dshi_0916 0.87 +2.0 939,042 + -0.2 939,055 + -0.9 939,184 - -0.1 939,214 + -1.0 939,265 - +0.4 939,538 - Dshi_0917 0.15 +0.1 939,563 + Dshi_0917 0.16 -0.1 939,571 - Dshi_0917 0.16 -2.4 939,641 + Dshi_0917 0.18 +1.4 939,660 - Dshi_0917 0.19 -3.2 939,708 + Dshi_0917 0.21 -1.9 939,757 - Dshi_0917 0.22 +2.4 940,024 + Dshi_0917 0.31 -1.3
Or see this region's nucleotide sequence