Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0849 and Dshi_0850 are separated by 59 nucleotides Dshi_0850 and Dshi_0851 are separated by 196 nucleotides
Dshi_0849: Dshi_0849 - 5'-Nucleotidase domain protein (RefSeq), at 858,004 to 859,593
_0849
Dshi_0850: Dshi_0850 - DEAD/DEAH box helicase domain protein (RefSeq), at 859,653 to 861,845
_0850
Dshi_0851: Dshi_0851 - protein of unknown function DUF159 (RefSeq), at 862,042 to 862,707
_0851
Position (kb) 859
860
861
862 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 858.748 kb on + strand, within Dshi_0849 at 858.781 kb on - strand, within Dshi_0849 at 858.819 kb on + strand, within Dshi_0849 at 858.819 kb on + strand, within Dshi_0849 at 858.912 kb on - strand, within Dshi_0849 at 858.981 kb on + strand, within Dshi_0849 at 858.987 kb on - strand, within Dshi_0849 at 859.235 kb on + strand, within Dshi_0849 at 859.388 kb on + strand, within Dshi_0849 at 859.467 kb on - strand at 859.550 kb on + strand at 859.554 kb on + strand at 859.558 kb on - strand at 859.597 kb on + strand at 859.651 kb on - strand at 859.959 kb on + strand, within Dshi_0850 at 860.044 kb on - strand, within Dshi_0850 at 860.297 kb on - strand, within Dshi_0850 at 860.297 kb on - strand, within Dshi_0850 at 860.324 kb on + strand, within Dshi_0850 at 860.341 kb on - strand, within Dshi_0850 at 860.349 kb on - strand, within Dshi_0850 at 860.385 kb on - strand, within Dshi_0850 at 860.490 kb on - strand, within Dshi_0850 at 860.492 kb on + strand, within Dshi_0850 at 860.789 kb on - strand, within Dshi_0850 at 860.886 kb on + strand, within Dshi_0850 at 860.902 kb on - strand, within Dshi_0850 at 860.935 kb on - strand, within Dshi_0850 at 860.951 kb on - strand, within Dshi_0850 at 860.959 kb on + strand, within Dshi_0850 at 861.004 kb on - strand, within Dshi_0850 at 861.013 kb on + strand, within Dshi_0850 at 861.043 kb on + strand, within Dshi_0850 at 861.091 kb on + strand, within Dshi_0850 at 861.123 kb on - strand, within Dshi_0850 at 861.125 kb on + strand, within Dshi_0850 at 861.133 kb on - strand, within Dshi_0850 at 861.133 kb on - strand, within Dshi_0850 at 861.258 kb on + strand, within Dshi_0850 at 861.263 kb on + strand, within Dshi_0850 at 861.302 kb on + strand, within Dshi_0850 at 861.303 kb on + strand, within Dshi_0850 at 861.385 kb on + strand, within Dshi_0850 at 861.523 kb on - strand, within Dshi_0850 at 861.963 kb on + strand at 862.036 kb on + strand at 862.140 kb on + strand, within Dshi_0851 at 862.140 kb on - strand, within Dshi_0851 at 862.201 kb on - strand, within Dshi_0851 at 862.215 kb on - strand, within Dshi_0851 at 862.255 kb on + strand, within Dshi_0851 at 862.359 kb on + strand, within Dshi_0851 at 862.367 kb on - strand, within Dshi_0851 at 862.394 kb on + strand, within Dshi_0851 at 862.409 kb on - strand, within Dshi_0851 at 862.425 kb on - strand, within Dshi_0851 at 862.615 kb on + strand, within Dshi_0851
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 858,748 + Dshi_0849 0.47 +0.1 858,781 - Dshi_0849 0.49 -1.0 858,819 + Dshi_0849 0.51 -0.7 858,819 + Dshi_0849 0.51 -3.9 858,912 - Dshi_0849 0.57 +0.7 858,981 + Dshi_0849 0.61 +0.1 858,987 - Dshi_0849 0.62 -0.9 859,235 + Dshi_0849 0.77 +0.5 859,388 + Dshi_0849 0.87 -1.7 859,467 - +0.5 859,550 + +0.5 859,554 + +1.5 859,558 - +0.8 859,597 + -1.9 859,651 - -2.9 859,959 + Dshi_0850 0.14 -1.1 860,044 - Dshi_0850 0.18 +0.5 860,297 - Dshi_0850 0.29 +0.5 860,297 - Dshi_0850 0.29 +0.1 860,324 + Dshi_0850 0.31 -1.1 860,341 - Dshi_0850 0.31 +0.2 860,349 - Dshi_0850 0.32 +0.5 860,385 - Dshi_0850 0.33 -1.1 860,490 - Dshi_0850 0.38 -1.5 860,492 + Dshi_0850 0.38 -1.3 860,789 - Dshi_0850 0.52 +1.5 860,886 + Dshi_0850 0.56 -1.7 860,902 - Dshi_0850 0.57 +3.1 860,935 - Dshi_0850 0.58 -1.5 860,951 - Dshi_0850 0.59 +2.1 860,959 + Dshi_0850 0.60 +0.2 861,004 - Dshi_0850 0.62 -1.1 861,013 + Dshi_0850 0.62 +1.0 861,043 + Dshi_0850 0.63 -2.1 861,091 + Dshi_0850 0.66 -0.8 861,123 - Dshi_0850 0.67 +0.5 861,125 + Dshi_0850 0.67 -0.2 861,133 - Dshi_0850 0.67 -3.8 861,133 - Dshi_0850 0.67 -0.5 861,258 + Dshi_0850 0.73 +0.5 861,263 + Dshi_0850 0.73 -2.8 861,302 + Dshi_0850 0.75 +0.5 861,303 + Dshi_0850 0.75 -0.5 861,385 + Dshi_0850 0.79 -0.5 861,523 - Dshi_0850 0.85 -2.3 861,963 + -2.2 862,036 + -0.5 862,140 + Dshi_0851 0.15 +0.5 862,140 - Dshi_0851 0.15 -1.5 862,201 - Dshi_0851 0.24 -0.1 862,215 - Dshi_0851 0.26 -1.1 862,255 + Dshi_0851 0.32 +2.6 862,359 + Dshi_0851 0.48 +1.5 862,367 - Dshi_0851 0.49 -1.8 862,394 + Dshi_0851 0.53 +1.5 862,409 - Dshi_0851 0.55 -2.1 862,425 - Dshi_0851 0.58 -2.0 862,615 + Dshi_0851 0.86 +0.5
Or see this region's nucleotide sequence