Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0837

Experiment: m.b. Tetracycline 0.006 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0836 and Dshi_0837 are separated by 11 nucleotidesDshi_0837 and Dshi_0838 are separated by 280 nucleotides Dshi_0836: Dshi_0836 - acetyl-CoA acetyltransferase (RefSeq), at 846,270 to 847,481 _0836 Dshi_0837: Dshi_0837 - Glutathione S-transferase domain (RefSeq), at 847,493 to 848,128 _0837 Dshi_0838: Dshi_0838 - acyl-CoA dehydrogenase domain protein (RefSeq), at 848,409 to 849,557 _0838 Position (kb) 847 848 849Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 846.506 kb on + strand, within Dshi_0836at 846.569 kb on + strand, within Dshi_0836at 846.627 kb on - strand, within Dshi_0836at 846.820 kb on - strand, within Dshi_0836at 846.890 kb on - strand, within Dshi_0836at 846.938 kb on - strand, within Dshi_0836at 846.967 kb on + strand, within Dshi_0836at 847.035 kb on - strand, within Dshi_0836at 847.076 kb on - strand, within Dshi_0836at 847.229 kb on + strand, within Dshi_0836at 847.367 kb on - strandat 847.440 kb on - strandat 847.472 kb on - strandat 847.511 kb on + strandat 847.511 kb on + strandat 847.520 kb on + strandat 847.533 kb on - strandat 847.554 kb on + strandat 847.555 kb on + strandat 847.561 kb on - strand, within Dshi_0837at 847.562 kb on - strand, within Dshi_0837at 847.615 kb on + strand, within Dshi_0837at 847.672 kb on + strand, within Dshi_0837at 847.682 kb on + strand, within Dshi_0837at 847.885 kb on - strand, within Dshi_0837at 847.933 kb on + strand, within Dshi_0837at 847.942 kb on - strand, within Dshi_0837at 848.004 kb on - strand, within Dshi_0837at 848.004 kb on - strand, within Dshi_0837at 848.137 kb on - strandat 848.158 kb on - strandat 848.165 kb on + strandat 848.168 kb on - strandat 848.254 kb on + strandat 848.257 kb on - strandat 848.269 kb on - strandat 848.381 kb on - strandat 848.389 kb on - strandat 848.407 kb on + strandat 848.415 kb on - strandat 848.490 kb on - strandat 848.666 kb on - strand, within Dshi_0838at 848.667 kb on + strand, within Dshi_0838at 848.694 kb on + strand, within Dshi_0838at 848.697 kb on - strand, within Dshi_0838at 848.725 kb on - strand, within Dshi_0838at 848.959 kb on - strand, within Dshi_0838at 848.980 kb on + strand, within Dshi_0838at 849.010 kb on + strand, within Dshi_0838at 849.012 kb on + strand, within Dshi_0838

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
remove
846,506 + Dshi_0836 0.19 +0.2
846,569 + Dshi_0836 0.25 +3.3
846,627 - Dshi_0836 0.29 -0.8
846,820 - Dshi_0836 0.45 -0.2
846,890 - Dshi_0836 0.51 +0.2
846,938 - Dshi_0836 0.55 -1.5
846,967 + Dshi_0836 0.58 -3.7
847,035 - Dshi_0836 0.63 -1.8
847,076 - Dshi_0836 0.67 +1.1
847,229 + Dshi_0836 0.79 +4.0
847,367 - -4.3
847,440 - +0.3
847,472 - -1.1
847,511 + -0.7
847,511 + +1.0
847,520 + +0.7
847,533 - +3.0
847,554 + +0.8
847,555 + -0.7
847,561 - Dshi_0837 0.11 +1.0
847,562 - Dshi_0837 0.11 -1.2
847,615 + Dshi_0837 0.19 -1.9
847,672 + Dshi_0837 0.28 -1.7
847,682 + Dshi_0837 0.30 -1.2
847,885 - Dshi_0837 0.62 +1.1
847,933 + Dshi_0837 0.69 -1.6
847,942 - Dshi_0837 0.71 -0.3
848,004 - Dshi_0837 0.80 -0.1
848,004 - Dshi_0837 0.80 -1.3
848,137 - +1.3
848,158 - +1.9
848,165 + +0.1
848,168 - +2.1
848,254 + +1.8
848,257 - -1.3
848,269 - -1.2
848,381 - +1.1
848,389 - -3.0
848,407 + -0.7
848,415 - -0.5
848,490 - +0.5
848,666 - Dshi_0838 0.22 -1.6
848,667 + Dshi_0838 0.22 -0.5
848,694 + Dshi_0838 0.25 +3.5
848,697 - Dshi_0838 0.25 +1.5
848,725 - Dshi_0838 0.28 +0.4
848,959 - Dshi_0838 0.48 -0.3
848,980 + Dshi_0838 0.50 -0.2
849,010 + Dshi_0838 0.52 +0.4
849,012 + Dshi_0838 0.52 +0.9

Or see this region's nucleotide sequence