Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0810 and Dshi_0811 overlap by 20 nucleotides Dshi_0811 and Dshi_0812 are separated by 183 nucleotides Dshi_0812 and Dshi_0813 are separated by 54 nucleotides Dshi_0813 and Dshi_0814 are separated by 89 nucleotides Dshi_0814 and Dshi_0815 are separated by 204 nucleotides Dshi_0815 and Dshi_0816 are separated by 46 nucleotides
Dshi_0810: Dshi_0810 - hypothetical protein (RefSeq), at 820,707 to 820,949
_0810
Dshi_0811: Dshi_0811 - hypothetical protein (RefSeq), at 820,930 to 821,163
_0811
Dshi_0812: Dshi_0812 - transcriptional regulator, TraR/DksA family (RefSeq), at 821,347 to 821,664
_0812
Dshi_0813: Dshi_0813 - hypothetical protein (RefSeq), at 821,719 to 821,967
_0813
Dshi_0814: Dshi_0814 - hypothetical protein (RefSeq), at 822,057 to 822,242
_0814
Dshi_0815: Dshi_0815 - Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 822,447 to 822,863
_0815
Dshi_0816: Dshi_0816 - hypothetical protein (RefSeq), at 822,910 to 823,185
_0816
Position (kb) 821
822 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 820.726 kb on - strand at 820.753 kb on - strand, within Dshi_0810 at 820.779 kb on + strand, within Dshi_0810 at 820.779 kb on + strand, within Dshi_0810 at 820.787 kb on - strand, within Dshi_0810 at 820.827 kb on + strand, within Dshi_0810 at 820.849 kb on + strand, within Dshi_0810 at 821.179 kb on + strand at 821.310 kb on - strand at 821.323 kb on - strand at 821.357 kb on - strand at 821.415 kb on + strand, within Dshi_0812 at 821.461 kb on - strand, within Dshi_0812 at 821.488 kb on - strand, within Dshi_0812 at 821.529 kb on - strand, within Dshi_0812 at 821.613 kb on + strand, within Dshi_0812 at 821.621 kb on - strand, within Dshi_0812 at 821.637 kb on + strand at 821.709 kb on - strand at 821.812 kb on + strand, within Dshi_0813 at 821.844 kb on - strand, within Dshi_0813 at 821.878 kb on - strand, within Dshi_0813 at 821.878 kb on - strand, within Dshi_0813 at 821.940 kb on + strand, within Dshi_0813 at 821.969 kb on - strand at 821.969 kb on - strand at 821.971 kb on + strand at 822.021 kb on - strand at 822.038 kb on - strand at 822.275 kb on - strand at 822.280 kb on - strand at 822.532 kb on - strand, within Dshi_0815 at 822.683 kb on - strand, within Dshi_0815 at 822.713 kb on - strand, within Dshi_0815 at 822.771 kb on - strand, within Dshi_0815 at 822.796 kb on + strand, within Dshi_0815
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 820,726 - -0.7 820,753 - Dshi_0810 0.19 -1.3 820,779 + Dshi_0810 0.30 +0.8 820,779 + Dshi_0810 0.30 -2.3 820,787 - Dshi_0810 0.33 -3.9 820,827 + Dshi_0810 0.49 -1.7 820,849 + Dshi_0810 0.58 -1.3 821,179 + +0.3 821,310 - -1.9 821,323 - +3.1 821,357 - -0.4 821,415 + Dshi_0812 0.21 -0.2 821,461 - Dshi_0812 0.36 -0.8 821,488 - Dshi_0812 0.44 +2.1 821,529 - Dshi_0812 0.57 -1.5 821,613 + Dshi_0812 0.84 +0.3 821,621 - Dshi_0812 0.86 -0.7 821,637 + +0.6 821,709 - -1.7 821,812 + Dshi_0813 0.37 +0.6 821,844 - Dshi_0813 0.50 -0.8 821,878 - Dshi_0813 0.64 +1.1 821,878 - Dshi_0813 0.64 +0.6 821,940 + Dshi_0813 0.89 +1.6 821,969 - -0.0 821,969 - +0.1 821,971 + +1.6 822,021 - +0.7 822,038 - +0.8 822,275 - -1.9 822,280 - +0.6 822,532 - Dshi_0815 0.20 +0.2 822,683 - Dshi_0815 0.57 -0.5 822,713 - Dshi_0815 0.64 -1.0 822,771 - Dshi_0815 0.78 +1.1 822,796 + Dshi_0815 0.84 +0.6
Or see this region's nucleotide sequence