Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0801 and Dshi_0802 overlap by 4 nucleotides Dshi_0802 and Dshi_0803 are separated by 50 nucleotides
Dshi_0801: Dshi_0801 - TRAP C4-dicarboxylate transport system permease DctM subunit (RefSeq), at 807,171 to 808,529
_0801
Dshi_0802: Dshi_0802 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 808,526 to 809,254
_0802
Dshi_0803: Dshi_0803 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 809,305 to 810,537
_0803
Position (kb) 808
809
810 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 807.548 kb on + strand, within Dshi_0801 at 807.652 kb on + strand, within Dshi_0801 at 807.662 kb on + strand, within Dshi_0801 at 807.663 kb on + strand, within Dshi_0801 at 807.670 kb on - strand, within Dshi_0801 at 807.670 kb on - strand, within Dshi_0801 at 807.741 kb on + strand, within Dshi_0801 at 807.775 kb on - strand, within Dshi_0801 at 807.781 kb on - strand, within Dshi_0801 at 807.839 kb on + strand, within Dshi_0801 at 807.840 kb on + strand, within Dshi_0801 at 807.872 kb on + strand, within Dshi_0801 at 807.915 kb on + strand, within Dshi_0801 at 808.038 kb on + strand, within Dshi_0801 at 808.046 kb on - strand, within Dshi_0801 at 808.069 kb on + strand, within Dshi_0801 at 808.132 kb on + strand, within Dshi_0801 at 808.140 kb on - strand, within Dshi_0801 at 808.246 kb on + strand, within Dshi_0801 at 808.247 kb on + strand, within Dshi_0801 at 808.256 kb on + strand, within Dshi_0801 at 808.259 kb on - strand, within Dshi_0801 at 808.280 kb on - strand, within Dshi_0801 at 808.401 kb on - strand at 808.544 kb on + strand at 808.544 kb on + strand at 808.631 kb on - strand, within Dshi_0802 at 808.672 kb on - strand, within Dshi_0802 at 808.727 kb on - strand, within Dshi_0802 at 808.727 kb on - strand, within Dshi_0802 at 808.734 kb on + strand, within Dshi_0802 at 808.734 kb on + strand, within Dshi_0802 at 808.828 kb on + strand, within Dshi_0802 at 808.838 kb on + strand, within Dshi_0802 at 808.838 kb on + strand, within Dshi_0802 at 808.862 kb on + strand, within Dshi_0802 at 808.880 kb on - strand, within Dshi_0802 at 809.008 kb on - strand, within Dshi_0802 at 809.010 kb on - strand, within Dshi_0802 at 809.116 kb on + strand, within Dshi_0802 at 809.179 kb on + strand, within Dshi_0802 at 809.182 kb on - strand at 809.233 kb on + strand at 809.271 kb on - strand at 809.271 kb on - strand at 809.378 kb on - strand at 809.573 kb on + strand, within Dshi_0803 at 809.578 kb on + strand, within Dshi_0803 at 809.581 kb on - strand, within Dshi_0803 at 809.586 kb on - strand, within Dshi_0803 at 809.698 kb on - strand, within Dshi_0803 at 809.779 kb on + strand, within Dshi_0803 at 809.805 kb on + strand, within Dshi_0803 at 809.847 kb on + strand, within Dshi_0803 at 809.854 kb on - strand, within Dshi_0803 at 809.920 kb on - strand, within Dshi_0803 at 809.920 kb on - strand, within Dshi_0803 at 809.944 kb on - strand, within Dshi_0803 at 809.975 kb on - strand, within Dshi_0803 at 810.035 kb on + strand, within Dshi_0803 at 810.068 kb on + strand, within Dshi_0803 at 810.103 kb on + strand, within Dshi_0803 at 810.104 kb on + strand, within Dshi_0803 at 810.117 kb on - strand, within Dshi_0803 at 810.117 kb on - strand, within Dshi_0803
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 807,548 + Dshi_0801 0.28 +3.9 807,652 + Dshi_0801 0.35 -0.4 807,662 + Dshi_0801 0.36 -0.6 807,663 + Dshi_0801 0.36 -0.9 807,670 - Dshi_0801 0.37 -0.9 807,670 - Dshi_0801 0.37 -3.0 807,741 + Dshi_0801 0.42 +1.4 807,775 - Dshi_0801 0.44 +0.3 807,781 - Dshi_0801 0.45 +0.8 807,839 + Dshi_0801 0.49 -1.8 807,840 + Dshi_0801 0.49 +0.3 807,872 + Dshi_0801 0.52 +0.8 807,915 + Dshi_0801 0.55 -0.1 808,038 + Dshi_0801 0.64 -1.7 808,046 - Dshi_0801 0.64 +0.4 808,069 + Dshi_0801 0.66 -1.0 808,132 + Dshi_0801 0.71 +1.1 808,140 - Dshi_0801 0.71 +0.3 808,246 + Dshi_0801 0.79 +0.7 808,247 + Dshi_0801 0.79 +0.6 808,256 + Dshi_0801 0.80 -0.1 808,259 - Dshi_0801 0.80 +0.3 808,280 - Dshi_0801 0.82 +0.6 808,401 - -0.4 808,544 + -3.1 808,544 + -0.4 808,631 - Dshi_0802 0.14 -3.0 808,672 - Dshi_0802 0.20 +1.9 808,727 - Dshi_0802 0.28 -0.8 808,727 - Dshi_0802 0.28 +1.8 808,734 + Dshi_0802 0.29 +0.6 808,734 + Dshi_0802 0.29 -0.1 808,828 + Dshi_0802 0.41 +1.4 808,838 + Dshi_0802 0.43 +1.6 808,838 + Dshi_0802 0.43 -0.1 808,862 + Dshi_0802 0.46 +2.6 808,880 - Dshi_0802 0.49 +2.6 809,008 - Dshi_0802 0.66 -1.9 809,010 - Dshi_0802 0.66 +1.6 809,116 + Dshi_0802 0.81 +0.8 809,179 + Dshi_0802 0.90 -0.2 809,182 - +0.4 809,233 + +0.3 809,271 - +0.6 809,271 - -0.2 809,378 - +0.9 809,573 + Dshi_0803 0.22 -1.2 809,578 + Dshi_0803 0.22 -0.4 809,581 - Dshi_0803 0.22 -1.2 809,586 - Dshi_0803 0.23 -0.8 809,698 - Dshi_0803 0.32 +1.0 809,779 + Dshi_0803 0.38 -2.0 809,805 + Dshi_0803 0.41 +1.8 809,847 + Dshi_0803 0.44 -0.1 809,854 - Dshi_0803 0.45 -3.7 809,920 - Dshi_0803 0.50 +0.6 809,920 - Dshi_0803 0.50 -0.4 809,944 - Dshi_0803 0.52 -0.7 809,975 - Dshi_0803 0.54 -0.9 810,035 + Dshi_0803 0.59 -1.2 810,068 + Dshi_0803 0.62 +2.2 810,103 + Dshi_0803 0.65 -1.4 810,104 + Dshi_0803 0.65 -0.9 810,117 - Dshi_0803 0.66 +1.1 810,117 - Dshi_0803 0.66 -1.4
Or see this region's nucleotide sequence