Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0777 and Dshi_0778 are separated by 128 nucleotides Dshi_0778 and Dshi_0779 are separated by 120 nucleotides Dshi_0779 and Dshi_R0019 are separated by 75 nucleotides Dshi_R0019 and Dshi_0780 are separated by 18 nucleotides
Dshi_0777: Dshi_0777 - threonyl-tRNA synthetase (RefSeq), at 782,164 to 784,128
_0777
Dshi_0778: Dshi_0778 - hypothetical protein (RefSeq), at 784,257 to 784,445
_0778
Dshi_0779: Dshi_0779 - transcriptional regulator, MarR family with acetyltransferase activity (RefSeq), at 784,566 to 785,522
_0779
Dshi_R0019: Dshi_R0019 - tRNA-His (RefSeq), at 785,598 to 785,674
_R0019
Dshi_0780: Dshi_0780 - alpha/beta hydrolase fold (RefSeq), at 785,693 to 786,637
_0780
Position (kb) 784
785
786 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 784.255 kb on + strand at 784.255 kb on + strand at 784.291 kb on + strand, within Dshi_0778 at 784.451 kb on - strand at 784.459 kb on - strand at 784.567 kb on - strand at 784.882 kb on - strand, within Dshi_0779 at 785.031 kb on - strand, within Dshi_0779 at 785.234 kb on - strand, within Dshi_0779 at 785.288 kb on - strand, within Dshi_0779 at 785.330 kb on - strand, within Dshi_0779 at 785.477 kb on - strand at 785.891 kb on + strand, within Dshi_0780 at 785.896 kb on + strand, within Dshi_0780 at 785.899 kb on - strand, within Dshi_0780 at 785.899 kb on - strand, within Dshi_0780 at 785.901 kb on + strand, within Dshi_0780 at 785.904 kb on - strand, within Dshi_0780 at 785.909 kb on - strand, within Dshi_0780 at 785.957 kb on - strand, within Dshi_0780 at 785.999 kb on - strand, within Dshi_0780 at 786.014 kb on - strand, within Dshi_0780 at 786.041 kb on - strand at 786.084 kb on - strand, within Dshi_0780 at 786.180 kb on + strand, within Dshi_0780 at 786.180 kb on + strand, within Dshi_0780 at 786.192 kb on + strand, within Dshi_0780 at 786.194 kb on + strand, within Dshi_0780 at 786.198 kb on - strand, within Dshi_0780 at 786.274 kb on + strand, within Dshi_0780 at 786.362 kb on + strand, within Dshi_0780 at 786.370 kb on - strand, within Dshi_0780 at 786.406 kb on - strand, within Dshi_0780
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 784,255 + -1.4 784,255 + -1.7 784,291 + Dshi_0778 0.18 +1.9 784,451 - +0.6 784,459 - +0.6 784,567 - -1.4 784,882 - Dshi_0779 0.33 +1.2 785,031 - Dshi_0779 0.49 -3.0 785,234 - Dshi_0779 0.70 +1.0 785,288 - Dshi_0779 0.75 -2.0 785,330 - Dshi_0779 0.80 -1.4 785,477 - -0.4 785,891 + Dshi_0780 0.21 -1.0 785,896 + Dshi_0780 0.21 -0.9 785,899 - Dshi_0780 0.22 -1.5 785,899 - Dshi_0780 0.22 -2.0 785,901 + Dshi_0780 0.22 -0.2 785,904 - Dshi_0780 0.22 -1.4 785,909 - Dshi_0780 0.23 +0.2 785,957 - Dshi_0780 0.28 -1.4 785,999 - Dshi_0780 0.32 -1.0 786,014 - Dshi_0780 0.34 +0.6 786,041 - +1.6 786,084 - Dshi_0780 0.41 +0.6 786,180 + Dshi_0780 0.52 +0.6 786,180 + Dshi_0780 0.52 -1.6 786,192 + Dshi_0780 0.53 -0.6 786,194 + Dshi_0780 0.53 -2.2 786,198 - Dshi_0780 0.53 -1.0 786,274 + Dshi_0780 0.61 -1.1 786,362 + Dshi_0780 0.71 +2.6 786,370 - Dshi_0780 0.72 -3.7 786,406 - Dshi_0780 0.75 +0.6
Or see this region's nucleotide sequence