Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0766 and Dshi_0767 are separated by 1 nucleotides Dshi_0767 and Dshi_0768 are separated by 176 nucleotides Dshi_0768 and Dshi_0769 are separated by 87 nucleotides Dshi_0769 and Dshi_0770 are separated by 220 nucleotides Dshi_0770 and Dshi_0771 overlap by 43 nucleotides
Dshi_0766: Dshi_0766 - protein of unknown function DUF1194 (RefSeq), at 773,856 to 774,593
_0766
Dshi_0767: Dshi_0767 - Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 774,595 to 775,023
_0767
Dshi_0768: Dshi_0768 - thymidylate synthase, flavin-dependent (RefSeq), at 775,200 to 776,117
_0768
Dshi_0769: Dshi_0769 - cold-shock DNA-binding domain protein (RefSeq), at 776,205 to 776,414
_0769
Dshi_0770: Dshi_0770 - arsenate reductase and related (RefSeq), at 776,635 to 776,946
_0770
Dshi_0771: Dshi_0771 - DoxX family protein (RefSeq), at 776,904 to 777,470
_0771
Position (kb) 775
776
777 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 774.254 kb on + strand, within Dshi_0766 at 774.303 kb on + strand, within Dshi_0766 at 774.531 kb on - strand at 774.537 kb on - strand at 774.539 kb on + strand at 774.539 kb on + strand at 774.542 kb on - strand at 774.542 kb on - strand at 774.542 kb on - strand at 774.575 kb on + strand at 774.646 kb on + strand, within Dshi_0767 at 774.679 kb on + strand, within Dshi_0767 at 774.882 kb on - strand, within Dshi_0767 at 774.911 kb on - strand, within Dshi_0767 at 774.950 kb on - strand, within Dshi_0767 at 774.979 kb on + strand, within Dshi_0767 at 775.065 kb on + strand at 776.162 kb on + strand at 776.216 kb on - strand at 776.243 kb on + strand, within Dshi_0769 at 776.244 kb on + strand, within Dshi_0769 at 776.409 kb on - strand at 776.498 kb on + strand at 776.535 kb on + strand at 776.578 kb on + strand at 776.593 kb on + strand at 776.601 kb on - strand at 776.601 kb on - strand at 776.601 kb on - strand at 776.601 kb on - strand at 776.601 kb on - strand at 776.611 kb on - strand at 776.628 kb on + strand at 776.813 kb on + strand, within Dshi_0770 at 776.920 kb on - strand at 776.932 kb on - strand at 776.992 kb on + strand, within Dshi_0771 at 776.995 kb on - strand, within Dshi_0771
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 774,254 + Dshi_0766 0.54 +1.3 774,303 + Dshi_0766 0.61 +1.6 774,531 - -2.2 774,537 - -0.8 774,539 + -1.1 774,539 + -2.4 774,542 - -1.8 774,542 - -2.0 774,542 - -0.5 774,575 + +0.6 774,646 + Dshi_0767 0.12 -1.4 774,679 + Dshi_0767 0.20 +1.0 774,882 - Dshi_0767 0.67 +1.6 774,911 - Dshi_0767 0.74 +2.9 774,950 - Dshi_0767 0.83 -2.4 774,979 + Dshi_0767 0.90 -2.4 775,065 + +0.2 776,162 + -0.4 776,216 - +0.8 776,243 + Dshi_0769 0.18 -0.4 776,244 + Dshi_0769 0.19 -2.7 776,409 - -2.1 776,498 + +2.2 776,535 + +0.4 776,578 + +0.6 776,593 + -2.7 776,601 - -0.1 776,601 - -0.0 776,601 - -2.7 776,601 - +2.2 776,601 - -0.0 776,611 - -0.7 776,628 + +2.9 776,813 + Dshi_0770 0.57 -1.1 776,920 - +1.6 776,932 - -0.8 776,992 + Dshi_0771 0.16 -3.1 776,995 - Dshi_0771 0.16 -1.0
Or see this region's nucleotide sequence