Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0750 and Dshi_0751 are separated by 180 nucleotides Dshi_0751 and Dshi_0752 are separated by 42 nucleotides Dshi_0752 and Dshi_0753 overlap by 13 nucleotides
Dshi_0750: Dshi_0750 - hypothetical protein (RefSeq), at 760,995 to 761,789
_0750
Dshi_0751: Dshi_0751 - protein of unknown function DUF344 (RefSeq), at 761,970 to 762,914
_0751
Dshi_0752: Dshi_0752 - protein of unknown function DUF1007 (RefSeq), at 762,957 to 763,637
_0752
Dshi_0753: Dshi_0753 - high-affinity nickel-transporter (RefSeq), at 763,625 to 764,581
_0753
Position (kb)
761
762
763 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 760.987 kb on - strand at 761.057 kb on - strand at 761.062 kb on - strand at 761.189 kb on - strand, within Dshi_0750 at 761.205 kb on + strand, within Dshi_0750 at 761.307 kb on - strand, within Dshi_0750 at 761.403 kb on - strand, within Dshi_0750 at 761.455 kb on + strand, within Dshi_0750 at 761.482 kb on - strand at 761.490 kb on + strand, within Dshi_0750 at 761.503 kb on + strand, within Dshi_0750 at 761.511 kb on - strand, within Dshi_0750 at 761.567 kb on + strand, within Dshi_0750 at 761.659 kb on + strand, within Dshi_0750 at 761.667 kb on - strand, within Dshi_0750 at 761.722 kb on + strand at 761.722 kb on + strand at 761.826 kb on - strand at 761.862 kb on + strand at 761.954 kb on + strand at 761.962 kb on - strand at 761.967 kb on + strand at 762.032 kb on - strand at 762.183 kb on - strand, within Dshi_0751 at 762.185 kb on - strand, within Dshi_0751 at 762.187 kb on + strand, within Dshi_0751 at 762.251 kb on - strand, within Dshi_0751 at 762.311 kb on + strand, within Dshi_0751 at 762.319 kb on - strand, within Dshi_0751 at 762.374 kb on - strand, within Dshi_0751 at 762.402 kb on - strand, within Dshi_0751 at 762.423 kb on + strand, within Dshi_0751 at 762.434 kb on + strand, within Dshi_0751 at 762.442 kb on - strand, within Dshi_0751 at 762.554 kb on + strand, within Dshi_0751 at 762.572 kb on + strand, within Dshi_0751 at 762.662 kb on + strand, within Dshi_0751 at 762.664 kb on - strand, within Dshi_0751 at 762.713 kb on - strand, within Dshi_0751 at 762.803 kb on - strand, within Dshi_0751 at 762.846 kb on - strand at 762.864 kb on + strand at 762.880 kb on - strand at 762.984 kb on + strand at 762.986 kb on + strand at 762.986 kb on + strand at 763.094 kb on + strand, within Dshi_0752 at 763.170 kb on - strand, within Dshi_0752 at 763.219 kb on - strand, within Dshi_0752 at 763.342 kb on + strand, within Dshi_0752 at 763.381 kb on + strand, within Dshi_0752 at 763.606 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 760,987 - +2.6 761,057 - +1.3 761,062 - -0.0 761,189 - Dshi_0750 0.24 +0.6 761,205 + Dshi_0750 0.26 -0.8 761,307 - Dshi_0750 0.39 +1.2 761,403 - Dshi_0750 0.51 -1.8 761,455 + Dshi_0750 0.58 +0.6 761,482 - +0.6 761,490 + Dshi_0750 0.62 -1.3 761,503 + Dshi_0750 0.64 +0.6 761,511 - Dshi_0750 0.65 -1.0 761,567 + Dshi_0750 0.72 -0.8 761,659 + Dshi_0750 0.84 +2.2 761,667 - Dshi_0750 0.85 -1.1 761,722 + -0.8 761,722 + -1.4 761,826 - -0.2 761,862 + -3.3 761,954 + -2.9 761,962 - -0.4 761,967 + -1.4 762,032 - +0.6 762,183 - Dshi_0751 0.23 -0.4 762,185 - Dshi_0751 0.23 +3.2 762,187 + Dshi_0751 0.23 -3.5 762,251 - Dshi_0751 0.30 -0.0 762,311 + Dshi_0751 0.36 +0.6 762,319 - Dshi_0751 0.37 -3.8 762,374 - Dshi_0751 0.43 +0.3 762,402 - Dshi_0751 0.46 +0.6 762,423 + Dshi_0751 0.48 -0.8 762,434 + Dshi_0751 0.49 +0.6 762,442 - Dshi_0751 0.50 +1.0 762,554 + Dshi_0751 0.62 -0.4 762,572 + Dshi_0751 0.64 -1.0 762,662 + Dshi_0751 0.73 -1.2 762,664 - Dshi_0751 0.73 -1.0 762,713 - Dshi_0751 0.79 +0.2 762,803 - Dshi_0751 0.88 -3.1 762,846 - +0.6 762,864 + -0.4 762,880 - -1.5 762,984 + -3.1 762,986 + -1.7 762,986 + +3.4 763,094 + Dshi_0752 0.20 -2.9 763,170 - Dshi_0752 0.31 +0.6 763,219 - Dshi_0752 0.38 -0.7 763,342 + Dshi_0752 0.57 +0.6 763,381 + Dshi_0752 0.62 +0.6 763,606 + -2.1
Or see this region's nucleotide sequence