Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0728 and Dshi_0729 overlap by 4 nucleotides Dshi_0729 and Dshi_0730 overlap by 1 nucleotides Dshi_0730 and Dshi_0731 overlap by 4 nucleotides Dshi_0731 and Dshi_0732 overlap by 4 nucleotides Dshi_0732 and Dshi_0733 overlap by 8 nucleotides Dshi_0733 and Dshi_0734 overlap by 4 nucleotides
Dshi_0728: Dshi_0728 - NADH dehydrogenase (quinone) (RefSeq), at 737,004 to 739,244
_0728
Dshi_0729: Dshi_0729 - Na+/H+ antiporter MnhB subunit-related protein (RefSeq), at 739,241 to 739,693
_0729
Dshi_0730: Dshi_0730 - NADH-ubiquinone oxidoreductase chain 4L (RefSeq), at 739,693 to 740,112
_0730
Dshi_0731: Dshi_0731 - NADH dehydrogenase (quinone) (RefSeq), at 740,109 to 741,644
_0731
Dshi_0732: Dshi_0732 - cation antiporter (RefSeq), at 741,641 to 741,994
_0732
Dshi_0733: Dshi_0733 - multiple resistance and pH regulation protein F (RefSeq), at 741,987 to 742,343
_0733
Dshi_0734: Dshi_0734 - monovalent cation/proton antiporter, MnhG/PhaG subunit (RefSeq), at 742,340 to 742,687
_0734
Position (kb) 740
741
742 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 739.129 kb on + strand at 739.140 kb on - strand at 739.149 kb on - strand at 739.150 kb on - strand at 739.212 kb on - strand at 739.255 kb on + strand at 739.338 kb on + strand, within Dshi_0729 at 739.596 kb on + strand, within Dshi_0729 at 739.757 kb on - strand, within Dshi_0730 at 739.784 kb on + strand, within Dshi_0730 at 739.871 kb on + strand, within Dshi_0730 at 739.951 kb on + strand, within Dshi_0730 at 739.951 kb on - strand, within Dshi_0730 at 740.056 kb on + strand, within Dshi_0730 at 740.073 kb on + strand at 740.128 kb on + strand at 740.224 kb on + strand at 740.258 kb on - strand at 740.264 kb on + strand, within Dshi_0731 at 740.270 kb on - strand, within Dshi_0731 at 740.272 kb on - strand, within Dshi_0731 at 740.272 kb on - strand, within Dshi_0731 at 740.430 kb on + strand, within Dshi_0731 at 740.437 kb on + strand, within Dshi_0731 at 740.652 kb on + strand, within Dshi_0731 at 740.660 kb on + strand, within Dshi_0731 at 740.772 kb on + strand, within Dshi_0731 at 740.855 kb on + strand, within Dshi_0731 at 740.858 kb on - strand, within Dshi_0731 at 740.932 kb on + strand, within Dshi_0731 at 740.945 kb on - strand, within Dshi_0731 at 741.033 kb on + strand, within Dshi_0731 at 741.048 kb on - strand, within Dshi_0731 at 741.132 kb on + strand, within Dshi_0731 at 741.154 kb on + strand, within Dshi_0731 at 741.154 kb on + strand, within Dshi_0731 at 741.303 kb on - strand, within Dshi_0731 at 741.310 kb on + strand, within Dshi_0731 at 741.347 kb on + strand, within Dshi_0731 at 741.472 kb on - strand, within Dshi_0731 at 741.506 kb on + strand at 741.514 kb on - strand at 741.554 kb on + strand at 741.577 kb on + strand at 741.577 kb on + strand at 741.604 kb on - strand at 741.734 kb on - strand, within Dshi_0732 at 741.763 kb on + strand, within Dshi_0732 at 742.122 kb on - strand, within Dshi_0733 at 742.141 kb on + strand, within Dshi_0733 at 742.375 kb on + strand, within Dshi_0734 at 742.470 kb on + strand, within Dshi_0734 at 742.518 kb on - strand, within Dshi_0734 at 742.578 kb on + strand, within Dshi_0734 at 742.601 kb on + strand, within Dshi_0734 at 742.628 kb on + strand, within Dshi_0734 at 742.629 kb on - strand, within Dshi_0734
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 739,129 + +2.1 739,140 - +1.1 739,149 - +0.5 739,150 - -1.5 739,212 - +1.0 739,255 + -2.3 739,338 + Dshi_0729 0.21 +2.1 739,596 + Dshi_0729 0.78 -0.2 739,757 - Dshi_0730 0.15 +0.5 739,784 + Dshi_0730 0.22 -2.0 739,871 + Dshi_0730 0.42 -0.5 739,951 + Dshi_0730 0.61 +4.0 739,951 - Dshi_0730 0.61 +0.6 740,056 + Dshi_0730 0.86 +1.9 740,073 + -1.0 740,128 + +0.1 740,224 + -1.1 740,258 - -1.7 740,264 + Dshi_0731 0.10 +2.1 740,270 - Dshi_0731 0.10 -2.3 740,272 - Dshi_0731 0.11 -3.6 740,272 - Dshi_0731 0.11 -2.3 740,430 + Dshi_0731 0.21 +0.4 740,437 + Dshi_0731 0.21 -1.8 740,652 + Dshi_0731 0.35 +3.6 740,660 + Dshi_0731 0.36 -1.0 740,772 + Dshi_0731 0.43 +1.7 740,855 + Dshi_0731 0.49 -0.3 740,858 - Dshi_0731 0.49 -1.4 740,932 + Dshi_0731 0.54 -0.9 740,945 - Dshi_0731 0.54 +0.6 741,033 + Dshi_0731 0.60 +0.6 741,048 - Dshi_0731 0.61 -2.0 741,132 + Dshi_0731 0.67 -0.3 741,154 + Dshi_0731 0.68 +2.4 741,154 + Dshi_0731 0.68 -3.3 741,303 - Dshi_0731 0.78 +0.6 741,310 + Dshi_0731 0.78 -2.7 741,347 + Dshi_0731 0.81 +1.9 741,472 - Dshi_0731 0.89 +0.6 741,506 + +0.1 741,514 - +0.2 741,554 + -0.8 741,577 + -1.8 741,577 + +0.6 741,604 - -0.4 741,734 - Dshi_0732 0.26 -0.4 741,763 + Dshi_0732 0.34 -4.0 742,122 - Dshi_0733 0.38 -2.6 742,141 + Dshi_0733 0.43 +2.4 742,375 + Dshi_0734 0.10 +0.6 742,470 + Dshi_0734 0.37 +0.2 742,518 - Dshi_0734 0.51 -1.7 742,578 + Dshi_0734 0.68 -0.4 742,601 + Dshi_0734 0.75 +0.6 742,628 + Dshi_0734 0.83 +2.9 742,629 - Dshi_0734 0.83 -2.6
Or see this region's nucleotide sequence