Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0718 and Dshi_0719 are separated by 99 nucleotides Dshi_0719 and Dshi_0720 overlap by 8 nucleotides Dshi_0720 and Dshi_0721 overlap by 4 nucleotides Dshi_0721 and Dshi_0722 are separated by 14 nucleotides
Dshi_0718: Dshi_0718 - Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) <small>(from data)</small>, at 726,256 to 727,788
_0718
Dshi_0719: Dshi_0719 - hypothetical protein (RefSeq), at 727,888 to 728,286
_0719
Dshi_0720: Dshi_0720 - Endoribonuclease L-PSP (RefSeq), at 728,279 to 728,668
_0720
Dshi_0721: Dshi_0721 - hypothetical protein (RefSeq), at 728,665 to 729,036
_0721
Dshi_0722: Dshi_0722 - hypothetical protein (RefSeq), at 729,051 to 729,410
_0722
Position (kb) 728
729 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 727.355 kb on + strand, within Dshi_0718 at 727.428 kb on + strand, within Dshi_0718 at 727.428 kb on + strand, within Dshi_0718 at 727.441 kb on + strand, within Dshi_0718 at 727.456 kb on + strand, within Dshi_0718 at 727.457 kb on - strand, within Dshi_0718 at 727.467 kb on + strand, within Dshi_0718 at 727.510 kb on + strand, within Dshi_0718 at 727.590 kb on - strand, within Dshi_0718 at 727.836 kb on - strand at 727.875 kb on - strand at 727.880 kb on - strand at 727.915 kb on + strand at 727.923 kb on + strand at 728.062 kb on + strand, within Dshi_0719 at 728.226 kb on + strand, within Dshi_0719 at 728.236 kb on + strand, within Dshi_0719 at 728.409 kb on + strand, within Dshi_0720 at 728.440 kb on + strand, within Dshi_0720 at 728.562 kb on - strand, within Dshi_0720 at 728.562 kb on - strand, within Dshi_0720 at 728.580 kb on - strand, within Dshi_0720 at 728.643 kb on - strand at 728.890 kb on + strand, within Dshi_0721 at 729.192 kb on + strand, within Dshi_0722 at 729.192 kb on + strand, within Dshi_0722 at 729.304 kb on + strand, within Dshi_0722 at 729.347 kb on + strand, within Dshi_0722 at 729.376 kb on + strand at 729.416 kb on + strand at 729.544 kb on + strand at 729.562 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 727,355 + Dshi_0718 0.72 +0.5 727,428 + Dshi_0718 0.76 -2.0 727,428 + Dshi_0718 0.76 +0.5 727,441 + Dshi_0718 0.77 -0.5 727,456 + Dshi_0718 0.78 -1.2 727,457 - Dshi_0718 0.78 -1.5 727,467 + Dshi_0718 0.79 +2.1 727,510 + Dshi_0718 0.82 -0.6 727,590 - Dshi_0718 0.87 -2.8 727,836 - -1.8 727,875 - -1.0 727,880 - +0.9 727,915 + -1.3 727,923 + +0.5 728,062 + Dshi_0719 0.44 +0.5 728,226 + Dshi_0719 0.85 +0.1 728,236 + Dshi_0719 0.87 -1.0 728,409 + Dshi_0720 0.33 -1.5 728,440 + Dshi_0720 0.41 +0.5 728,562 - Dshi_0720 0.73 -0.6 728,562 - Dshi_0720 0.73 -1.8 728,580 - Dshi_0720 0.77 -1.8 728,643 - -1.0 728,890 + Dshi_0721 0.60 +0.2 729,192 + Dshi_0722 0.39 -2.3 729,192 + Dshi_0722 0.39 -0.6 729,304 + Dshi_0722 0.70 +0.5 729,347 + Dshi_0722 0.82 -2.0 729,376 + -1.3 729,416 + -0.9 729,544 + +2.1 729,562 - -1.8
Or see this region's nucleotide sequence