Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0625 and Dshi_0626 are separated by 230 nucleotides Dshi_0626 and Dshi_0627 overlap by 8 nucleotides Dshi_0627 and Dshi_0628 are separated by 36 nucleotides
Dshi_0625: Dshi_0625 - hypothetical protein (RefSeq), at 623,104 to 623,826
_0625
Dshi_0626: Dshi_0626 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 624,057 to 624,743
_0626
Dshi_0627: Dshi_0627 - ABC transporter related (RefSeq), at 624,736 to 625,491
_0627
Dshi_0628: Dshi_0628 - extracellular solute-binding protein family 1 (RefSeq), at 625,528 to 626,358
_0628
Position (kb) 624
625 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 623.220 kb on - strand, within Dshi_0625 at 623.481 kb on - strand, within Dshi_0625 at 624.259 kb on - strand, within Dshi_0626 at 624.305 kb on + strand, within Dshi_0626 at 624.313 kb on + strand, within Dshi_0626 at 624.391 kb on + strand, within Dshi_0626 at 624.397 kb on - strand, within Dshi_0626 at 624.444 kb on + strand, within Dshi_0626 at 624.501 kb on - strand, within Dshi_0626 at 624.522 kb on - strand, within Dshi_0626 at 624.563 kb on - strand, within Dshi_0626 at 624.679 kb on + strand at 624.761 kb on + strand at 624.849 kb on - strand, within Dshi_0627 at 624.881 kb on - strand, within Dshi_0627 at 624.890 kb on - strand, within Dshi_0627 at 624.903 kb on - strand, within Dshi_0627 at 625.039 kb on + strand, within Dshi_0627 at 625.058 kb on - strand at 625.204 kb on + strand, within Dshi_0627 at 625.298 kb on - strand, within Dshi_0627 at 625.342 kb on - strand, within Dshi_0627 at 625.342 kb on - strand, within Dshi_0627 at 625.402 kb on - strand, within Dshi_0627 at 625.619 kb on + strand, within Dshi_0628 at 625.667 kb on - strand, within Dshi_0628 at 625.718 kb on - strand, within Dshi_0628
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 623,220 - Dshi_0625 0.16 +1.9 623,481 - Dshi_0625 0.52 -0.2 624,259 - Dshi_0626 0.29 +0.1 624,305 + Dshi_0626 0.36 -0.0 624,313 + Dshi_0626 0.37 -2.4 624,391 + Dshi_0626 0.49 +0.4 624,397 - Dshi_0626 0.49 -0.1 624,444 + Dshi_0626 0.56 -0.1 624,501 - Dshi_0626 0.65 -0.6 624,522 - Dshi_0626 0.68 -0.0 624,563 - Dshi_0626 0.74 +0.8 624,679 + -0.7 624,761 + -1.2 624,849 - Dshi_0627 0.15 +0.7 624,881 - Dshi_0627 0.19 -3.0 624,890 - Dshi_0627 0.20 -1.0 624,903 - Dshi_0627 0.22 -1.7 625,039 + Dshi_0627 0.40 -1.2 625,058 - +0.4 625,204 + Dshi_0627 0.62 +1.4 625,298 - Dshi_0627 0.74 +0.4 625,342 - Dshi_0627 0.80 -0.1 625,342 - Dshi_0627 0.80 -0.7 625,402 - Dshi_0627 0.88 -3.0 625,619 + Dshi_0628 0.11 -0.6 625,667 - Dshi_0628 0.17 +0.4 625,718 - Dshi_0628 0.23 -0.6
Or see this region's nucleotide sequence