Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0606

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0605 and Dshi_0606 are separated by 25 nucleotidesDshi_0606 and Dshi_0607 are separated by 64 nucleotides Dshi_0605: Dshi_0605 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 597,820 to 599,106 _0605 Dshi_0606: Dshi_0606 - hypothetical protein (RefSeq), at 599,132 to 599,698 _0606 Dshi_0607: Dshi_0607 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 599,763 to 600,845 _0607 Position (kb) 599 600Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 598.140 kb on - strand, within Dshi_0605at 598.146 kb on - strand, within Dshi_0605at 598.158 kb on - strand, within Dshi_0605at 598.168 kb on - strand, within Dshi_0605at 598.170 kb on + strand, within Dshi_0605at 598.185 kb on + strand, within Dshi_0605at 598.204 kb on + strand, within Dshi_0605at 598.217 kb on - strand, within Dshi_0605at 598.280 kb on - strand, within Dshi_0605at 598.288 kb on + strand, within Dshi_0605at 598.327 kb on - strand, within Dshi_0605at 598.330 kb on - strand, within Dshi_0605at 598.331 kb on + strand, within Dshi_0605at 598.332 kb on + strand, within Dshi_0605at 598.340 kb on - strand, within Dshi_0605at 598.340 kb on - strand, within Dshi_0605at 598.406 kb on + strand, within Dshi_0605at 598.410 kb on + strand, within Dshi_0605at 598.414 kb on - strand, within Dshi_0605at 598.414 kb on - strand, within Dshi_0605at 598.420 kb on + strand, within Dshi_0605at 598.467 kb on + strand, within Dshi_0605at 598.474 kb on - strand, within Dshi_0605at 598.475 kb on - strand, within Dshi_0605at 598.475 kb on - strand, within Dshi_0605at 598.475 kb on - strand, within Dshi_0605at 598.475 kb on - strand, within Dshi_0605at 598.475 kb on - strand, within Dshi_0605at 598.511 kb on + strand, within Dshi_0605at 598.511 kb on + strand, within Dshi_0605at 598.514 kb on - strand, within Dshi_0605at 598.521 kb on + strand, within Dshi_0605at 598.529 kb on - strand, within Dshi_0605at 598.531 kb on + strand, within Dshi_0605at 598.537 kb on + strand, within Dshi_0605at 598.545 kb on - strand, within Dshi_0605at 598.579 kb on - strand, within Dshi_0605at 598.582 kb on - strand, within Dshi_0605at 598.594 kb on + strand, within Dshi_0605at 598.605 kb on + strand, within Dshi_0605at 598.636 kb on - strand, within Dshi_0605at 598.654 kb on - strand, within Dshi_0605at 598.664 kb on - strand, within Dshi_0605at 598.683 kb on + strand, within Dshi_0605at 598.683 kb on + strand, within Dshi_0605at 598.694 kb on + strand, within Dshi_0605at 598.694 kb on + strand, within Dshi_0605at 598.757 kb on - strand, within Dshi_0605at 598.762 kb on - strand, within Dshi_0605at 598.777 kb on + strand, within Dshi_0605at 598.800 kb on - strand, within Dshi_0605at 598.822 kb on - strand, within Dshi_0605at 598.861 kb on - strand, within Dshi_0605at 598.868 kb on + strand, within Dshi_0605at 598.868 kb on + strand, within Dshi_0605at 598.868 kb on + strand, within Dshi_0605at 598.868 kb on + strand, within Dshi_0605at 598.868 kb on + strand, within Dshi_0605at 598.876 kb on - strand, within Dshi_0605at 598.876 kb on - strand, within Dshi_0605at 598.876 kb on - strand, within Dshi_0605at 598.876 kb on - strand, within Dshi_0605at 598.876 kb on - strand, within Dshi_0605at 598.876 kb on - strand, within Dshi_0605at 598.876 kb on - strand, within Dshi_0605at 598.876 kb on - strand, within Dshi_0605at 598.876 kb on - strand, within Dshi_0605at 598.876 kb on - strand, within Dshi_0605at 598.876 kb on - strand, within Dshi_0605at 598.876 kb on - strand, within Dshi_0605at 598.878 kb on - strand, within Dshi_0605at 598.881 kb on - strand, within Dshi_0605at 598.932 kb on - strand, within Dshi_0605at 598.962 kb on - strand, within Dshi_0605at 598.980 kb on + strandat 598.988 kb on - strandat 599.019 kb on + strandat 599.019 kb on + strandat 599.027 kb on - strandat 599.032 kb on - strandat 599.043 kb on - strandat 599.067 kb on + strandat 599.097 kb on + strandat 599.099 kb on - strandat 599.108 kb on + strandat 599.108 kb on + strandat 599.108 kb on + strandat 599.116 kb on - strandat 599.116 kb on - strandat 599.116 kb on - strandat 599.116 kb on - strandat 599.116 kb on - strandat 599.116 kb on - strandat 599.136 kb on + strandat 599.171 kb on + strandat 599.188 kb on - strandat 599.208 kb on + strand, within Dshi_0606at 599.269 kb on - strand, within Dshi_0606at 599.306 kb on - strand, within Dshi_0606at 599.328 kb on - strand, within Dshi_0606at 599.390 kb on + strand, within Dshi_0606at 599.420 kb on - strand, within Dshi_0606at 599.433 kb on + strand, within Dshi_0606at 599.441 kb on - strand, within Dshi_0606at 599.465 kb on - strand, within Dshi_0606at 599.468 kb on + strand, within Dshi_0606at 599.470 kb on - strand, within Dshi_0606at 599.470 kb on - strand, within Dshi_0606at 599.472 kb on + strand, within Dshi_0606at 599.504 kb on + strand, within Dshi_0606at 599.510 kb on + strand, within Dshi_0606at 599.510 kb on + strand, within Dshi_0606at 599.512 kb on - strand, within Dshi_0606at 599.513 kb on - strand, within Dshi_0606at 599.534 kb on + strand, within Dshi_0606at 599.546 kb on + strand, within Dshi_0606at 599.551 kb on + strand, within Dshi_0606at 599.551 kb on + strand, within Dshi_0606at 599.551 kb on + strand, within Dshi_0606at 599.554 kb on - strand, within Dshi_0606at 599.559 kb on - strand, within Dshi_0606at 599.559 kb on - strand, within Dshi_0606at 599.574 kb on + strand, within Dshi_0606at 599.574 kb on + strand, within Dshi_0606at 599.582 kb on - strand, within Dshi_0606at 599.635 kb on - strand, within Dshi_0606at 599.708 kb on + strandat 599.749 kb on + strandat 599.758 kb on - strandat 599.780 kb on - strandat 599.780 kb on - strandat 599.817 kb on + strandat 599.817 kb on + strandat 599.817 kb on + strandat 599.817 kb on + strandat 599.844 kb on - strandat 599.844 kb on - strandat 599.854 kb on - strandat 599.883 kb on - strand, within Dshi_0607at 599.897 kb on - strand, within Dshi_0607at 599.926 kb on - strand, within Dshi_0607at 599.932 kb on - strand, within Dshi_0607at 599.958 kb on + strand, within Dshi_0607at 599.973 kb on + strand, within Dshi_0607at 599.981 kb on - strand, within Dshi_0607at 599.981 kb on - strand, within Dshi_0607at 599.981 kb on - strand, within Dshi_0607at 599.981 kb on - strand, within Dshi_0607at 599.981 kb on - strand, within Dshi_0607at 599.981 kb on - strand, within Dshi_0607at 599.987 kb on + strand, within Dshi_0607at 599.987 kb on + strand, within Dshi_0607at 599.987 kb on + strand, within Dshi_0607at 599.995 kb on - strand, within Dshi_0607at 600.083 kb on + strand, within Dshi_0607at 600.098 kb on + strand, within Dshi_0607at 600.113 kb on - strand, within Dshi_0607at 600.146 kb on - strand, within Dshi_0607at 600.175 kb on + strand, within Dshi_0607at 600.183 kb on - strand, within Dshi_0607at 600.209 kb on - strand, within Dshi_0607at 600.239 kb on + strand, within Dshi_0607at 600.247 kb on - strand, within Dshi_0607at 600.261 kb on + strand, within Dshi_0607at 600.290 kb on - strand, within Dshi_0607at 600.339 kb on - strand, within Dshi_0607at 600.464 kb on - strand, within Dshi_0607at 600.464 kb on - strand, within Dshi_0607at 600.486 kb on + strand, within Dshi_0607at 600.494 kb on - strand, within Dshi_0607at 600.506 kb on + strand, within Dshi_0607at 600.514 kb on - strand, within Dshi_0607at 600.521 kb on + strand, within Dshi_0607at 600.529 kb on - strand, within Dshi_0607at 600.534 kb on - strand, within Dshi_0607at 600.566 kb on + strand, within Dshi_0607at 600.566 kb on + strand, within Dshi_0607at 600.574 kb on - strand, within Dshi_0607at 600.581 kb on + strand, within Dshi_0607at 600.585 kb on - strand, within Dshi_0607at 600.599 kb on + strand, within Dshi_0607at 600.615 kb on - strand, within Dshi_0607at 600.615 kb on - strand, within Dshi_0607at 600.622 kb on - strand, within Dshi_0607at 600.625 kb on + strand, within Dshi_0607at 600.625 kb on + strand, within Dshi_0607at 600.633 kb on - strand, within Dshi_0607at 600.633 kb on - strand, within Dshi_0607at 600.639 kb on - strand, within Dshi_0607at 600.639 kb on - strand, within Dshi_0607at 600.682 kb on + strand, within Dshi_0607at 600.682 kb on + strand, within Dshi_0607at 600.690 kb on - strand, within Dshi_0607at 600.690 kb on - strand, within Dshi_0607at 600.698 kb on - strand, within Dshi_0607

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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598,140 - Dshi_0605 0.25 +0.3
598,146 - Dshi_0605 0.25 +0.5
598,158 - Dshi_0605 0.26 +0.3
598,168 - Dshi_0605 0.27 -1.7
598,170 + Dshi_0605 0.27 -0.8
598,185 + Dshi_0605 0.28 -0.7
598,204 + Dshi_0605 0.30 -1.7
598,217 - Dshi_0605 0.31 +0.3
598,280 - Dshi_0605 0.36 -0.7
598,288 + Dshi_0605 0.36 -0.9
598,327 - Dshi_0605 0.39 -0.6
598,330 - Dshi_0605 0.40 +1.3
598,331 + Dshi_0605 0.40 -1.2
598,332 + Dshi_0605 0.40 -3.0
598,340 - Dshi_0605 0.40 -1.0
598,340 - Dshi_0605 0.40 -4.9
598,406 + Dshi_0605 0.46 -1.7
598,410 + Dshi_0605 0.46 -0.8
598,414 - Dshi_0605 0.46 -2.9
598,414 - Dshi_0605 0.46 -0.7
598,420 + Dshi_0605 0.47 -1.8
598,467 + Dshi_0605 0.50 +0.1
598,474 - Dshi_0605 0.51 -1.6
598,475 - Dshi_0605 0.51 +1.5
598,475 - Dshi_0605 0.51 -2.6
598,475 - Dshi_0605 0.51 +0.3
598,475 - Dshi_0605 0.51 +2.9
598,475 - Dshi_0605 0.51 -1.8
598,511 + Dshi_0605 0.54 -1.0
598,511 + Dshi_0605 0.54 -0.8
598,514 - Dshi_0605 0.54 -0.9
598,521 + Dshi_0605 0.54 -1.5
598,529 - Dshi_0605 0.55 +0.3
598,531 + Dshi_0605 0.55 -0.4
598,537 + Dshi_0605 0.56 -0.6
598,545 - Dshi_0605 0.56 -0.4
598,579 - Dshi_0605 0.59 -0.8
598,582 - Dshi_0605 0.59 -0.6
598,594 + Dshi_0605 0.60 -2.9
598,605 + Dshi_0605 0.61 -2.9
598,636 - Dshi_0605 0.63 -3.5
598,654 - Dshi_0605 0.65 -0.1
598,664 - Dshi_0605 0.66 +0.6
598,683 + Dshi_0605 0.67 -1.1
598,683 + Dshi_0605 0.67 -1.0
598,694 + Dshi_0605 0.68 -1.3
598,694 + Dshi_0605 0.68 -1.3
598,757 - Dshi_0605 0.73 -0.3
598,762 - Dshi_0605 0.73 -0.7
598,777 + Dshi_0605 0.74 -0.7
598,800 - Dshi_0605 0.76 -1.2
598,822 - Dshi_0605 0.78 +0.3
598,861 - Dshi_0605 0.81 -2.9
598,868 + Dshi_0605 0.81 +0.3
598,868 + Dshi_0605 0.81 -2.5
598,868 + Dshi_0605 0.81 +2.6
598,868 + Dshi_0605 0.81 +1.9
598,868 + Dshi_0605 0.81 -0.8
598,876 - Dshi_0605 0.82 -1.5
598,876 - Dshi_0605 0.82 -0.6
598,876 - Dshi_0605 0.82 -2.0
598,876 - Dshi_0605 0.82 -0.7
598,876 - Dshi_0605 0.82 -0.2
598,876 - Dshi_0605 0.82 -0.6
598,876 - Dshi_0605 0.82 -2.0
598,876 - Dshi_0605 0.82 +0.3
598,876 - Dshi_0605 0.82 -2.3
598,876 - Dshi_0605 0.82 -0.0
598,876 - Dshi_0605 0.82 -2.5
598,876 - Dshi_0605 0.82 +0.3
598,878 - Dshi_0605 0.82 -0.1
598,881 - Dshi_0605 0.82 -2.4
598,932 - Dshi_0605 0.86 +0.3
598,962 - Dshi_0605 0.89 -0.4
598,980 + -1.1
598,988 - -1.4
599,019 + -0.2
599,019 + -1.2
599,027 - -2.5
599,032 - -1.3
599,043 - +0.3
599,067 + +2.3
599,097 + -2.2
599,099 - -1.8
599,108 + -2.2
599,108 + -1.3
599,108 + -0.0
599,116 - -0.1
599,116 - -1.0
599,116 - -2.6
599,116 - -3.6
599,116 - +0.9
599,116 - -3.3
599,136 + -0.1
599,171 + -0.0
599,188 - -1.6
599,208 + Dshi_0606 0.13 +2.3
599,269 - Dshi_0606 0.24 -0.4
599,306 - Dshi_0606 0.31 +0.6
599,328 - Dshi_0606 0.35 -0.8
599,390 + Dshi_0606 0.46 -0.7
599,420 - Dshi_0606 0.51 +0.3
599,433 + Dshi_0606 0.53 -0.8
599,441 - Dshi_0606 0.54 +0.8
599,465 - Dshi_0606 0.59 +0.3
599,468 + Dshi_0606 0.59 -1.9
599,470 - Dshi_0606 0.60 +0.9
599,470 - Dshi_0606 0.60 -0.7
599,472 + Dshi_0606 0.60 -3.0
599,504 + Dshi_0606 0.66 -1.2
599,510 + Dshi_0606 0.67 -1.5
599,510 + Dshi_0606 0.67 -1.1
599,512 - Dshi_0606 0.67 +0.7
599,513 - Dshi_0606 0.67 +0.8
599,534 + Dshi_0606 0.71 -2.4
599,546 + Dshi_0606 0.73 -3.3
599,551 + Dshi_0606 0.74 +0.3
599,551 + Dshi_0606 0.74 -1.2
599,551 + Dshi_0606 0.74 +0.3
599,554 - Dshi_0606 0.74 +1.6
599,559 - Dshi_0606 0.75 +0.9
599,559 - Dshi_0606 0.75 -0.5
599,574 + Dshi_0606 0.78 -1.8
599,574 + Dshi_0606 0.78 -1.1
599,582 - Dshi_0606 0.79 +1.3
599,635 - Dshi_0606 0.89 -1.9
599,708 + -1.7
599,749 + -2.7
599,758 - +2.3
599,780 - -0.8
599,780 - -2.6
599,817 + -1.3
599,817 + -1.7
599,817 + -0.9
599,817 + -0.8
599,844 - -4.0
599,844 - -0.3
599,854 - -3.3
599,883 - Dshi_0607 0.11 -1.4
599,897 - Dshi_0607 0.12 -1.0
599,926 - Dshi_0607 0.15 +0.6
599,932 - Dshi_0607 0.16 -1.7
599,958 + Dshi_0607 0.18 -0.1
599,973 + Dshi_0607 0.19 -0.9
599,981 - Dshi_0607 0.20 -1.3
599,981 - Dshi_0607 0.20 +1.0
599,981 - Dshi_0607 0.20 -1.3
599,981 - Dshi_0607 0.20 -0.5
599,981 - Dshi_0607 0.20 -0.9
599,981 - Dshi_0607 0.20 -0.9
599,987 + Dshi_0607 0.21 -0.7
599,987 + Dshi_0607 0.21 -1.0
599,987 + Dshi_0607 0.21 -1.4
599,995 - Dshi_0607 0.21 -0.2
600,083 + Dshi_0607 0.30 -1.0
600,098 + Dshi_0607 0.31 -1.2
600,113 - Dshi_0607 0.32 -0.6
600,146 - Dshi_0607 0.35 -0.7
600,175 + Dshi_0607 0.38 -1.4
600,183 - Dshi_0607 0.39 -0.6
600,209 - Dshi_0607 0.41 +0.3
600,239 + Dshi_0607 0.44 +0.4
600,247 - Dshi_0607 0.45 -0.4
600,261 + Dshi_0607 0.46 -1.7
600,290 - Dshi_0607 0.49 -0.3
600,339 - Dshi_0607 0.53 -0.8
600,464 - Dshi_0607 0.65 +3.5
600,464 - Dshi_0607 0.65 -0.2
600,486 + Dshi_0607 0.67 -0.1
600,494 - Dshi_0607 0.67 -3.4
600,506 + Dshi_0607 0.69 -0.5
600,514 - Dshi_0607 0.69 +1.0
600,521 + Dshi_0607 0.70 -3.2
600,529 - Dshi_0607 0.71 +0.7
600,534 - Dshi_0607 0.71 -0.2
600,566 + Dshi_0607 0.74 -0.8
600,566 + Dshi_0607 0.74 -1.2
600,574 - Dshi_0607 0.75 -2.0
600,581 + Dshi_0607 0.76 -0.0
600,585 - Dshi_0607 0.76 +0.7
600,599 + Dshi_0607 0.77 -0.9
600,615 - Dshi_0607 0.79 +2.9
600,615 - Dshi_0607 0.79 -0.2
600,622 - Dshi_0607 0.79 -1.9
600,625 + Dshi_0607 0.80 +0.7
600,625 + Dshi_0607 0.80 -0.9
600,633 - Dshi_0607 0.80 -1.7
600,633 - Dshi_0607 0.80 +1.3
600,639 - Dshi_0607 0.81 -1.0
600,639 - Dshi_0607 0.81 -0.0
600,682 + Dshi_0607 0.85 +0.5
600,682 + Dshi_0607 0.85 -2.3
600,690 - Dshi_0607 0.86 -0.8
600,690 - Dshi_0607 0.86 -0.0
600,698 - Dshi_0607 0.86 -0.7

Or see this region's nucleotide sequence