Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0574 and Dshi_0575 are separated by 66 nucleotides Dshi_0575 and Dshi_0576 are separated by 411 nucleotides Dshi_0576 and Dshi_0577 are separated by 90 nucleotides
Dshi_0574: Dshi_0574 - Haemin-degrading family protein (RefSeq), at 563,756 to 564,787
_0574
Dshi_0575: Dshi_0575 - hypothetical protein (RefSeq), at 564,854 to 565,354
_0575
Dshi_0576: Dshi_0576 - transcriptional regulator, LysR family (RefSeq), at 565,766 to 566,635
_0576
Dshi_0577: Dshi_0577 - aldehyde dehydrogenase (RefSeq), at 566,726 to 568,177
_0577
Position (kb) 565
566
567 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 564.857 kb on + strand at 564.912 kb on + strand, within Dshi_0575 at 564.954 kb on + strand, within Dshi_0575 at 564.962 kb on - strand, within Dshi_0575 at 564.967 kb on - strand, within Dshi_0575 at 564.986 kb on + strand, within Dshi_0575 at 565.016 kb on + strand, within Dshi_0575 at 565.027 kb on + strand, within Dshi_0575 at 565.029 kb on + strand, within Dshi_0575 at 565.079 kb on + strand, within Dshi_0575 at 565.087 kb on - strand, within Dshi_0575 at 565.100 kb on + strand, within Dshi_0575 at 565.100 kb on + strand, within Dshi_0575 at 565.108 kb on - strand, within Dshi_0575 at 565.116 kb on + strand, within Dshi_0575 at 565.125 kb on - strand, within Dshi_0575 at 565.150 kb on + strand, within Dshi_0575 at 565.150 kb on + strand, within Dshi_0575 at 565.157 kb on + strand, within Dshi_0575 at 565.157 kb on + strand, within Dshi_0575 at 565.157 kb on + strand, within Dshi_0575 at 565.157 kb on + strand, within Dshi_0575 at 565.157 kb on + strand, within Dshi_0575 at 565.158 kb on - strand, within Dshi_0575 at 565.190 kb on + strand, within Dshi_0575 at 565.190 kb on + strand, within Dshi_0575 at 565.198 kb on - strand, within Dshi_0575 at 565.198 kb on - strand, within Dshi_0575 at 565.260 kb on - strand, within Dshi_0575 at 565.261 kb on + strand, within Dshi_0575 at 565.269 kb on - strand, within Dshi_0575 at 565.385 kb on + strand at 565.393 kb on - strand at 565.412 kb on - strand at 565.422 kb on - strand at 565.437 kb on - strand at 565.491 kb on - strand at 565.499 kb on - strand at 565.506 kb on + strand at 565.521 kb on - strand at 565.523 kb on + strand at 565.531 kb on - strand at 565.531 kb on - strand at 565.571 kb on + strand at 565.571 kb on + strand at 565.584 kb on - strand at 565.587 kb on + strand at 565.587 kb on + strand at 565.587 kb on + strand at 565.595 kb on - strand at 565.595 kb on - strand at 565.595 kb on - strand at 565.595 kb on - strand at 565.595 kb on - strand at 565.595 kb on - strand at 565.618 kb on - strand at 565.618 kb on - strand at 565.627 kb on + strand at 565.635 kb on - strand at 565.635 kb on - strand at 565.635 kb on - strand at 565.642 kb on - strand at 565.677 kb on - strand at 565.687 kb on - strand at 565.701 kb on + strand at 565.764 kb on - strand at 565.823 kb on - strand at 565.848 kb on - strand at 565.849 kb on + strand at 565.869 kb on - strand, within Dshi_0576 at 565.882 kb on - strand, within Dshi_0576 at 565.884 kb on + strand, within Dshi_0576 at 565.892 kb on - strand, within Dshi_0576 at 565.913 kb on - strand, within Dshi_0576 at 565.949 kb on + strand, within Dshi_0576 at 565.983 kb on - strand, within Dshi_0576 at 565.983 kb on - strand, within Dshi_0576 at 565.992 kb on + strand, within Dshi_0576 at 566.015 kb on - strand, within Dshi_0576 at 566.079 kb on + strand, within Dshi_0576 at 566.091 kb on + strand, within Dshi_0576 at 566.099 kb on - strand, within Dshi_0576 at 566.099 kb on - strand, within Dshi_0576 at 566.099 kb on - strand, within Dshi_0576 at 566.108 kb on + strand, within Dshi_0576 at 566.108 kb on + strand, within Dshi_0576 at 566.116 kb on - strand, within Dshi_0576 at 566.127 kb on + strand, within Dshi_0576 at 566.128 kb on - strand, within Dshi_0576 at 566.145 kb on - strand, within Dshi_0576 at 566.177 kb on + strand, within Dshi_0576 at 566.224 kb on + strand, within Dshi_0576 at 566.228 kb on - strand, within Dshi_0576 at 566.279 kb on + strand, within Dshi_0576 at 566.287 kb on - strand, within Dshi_0576 at 566.349 kb on + strand, within Dshi_0576 at 566.380 kb on - strand, within Dshi_0576 at 566.397 kb on + strand, within Dshi_0576 at 566.413 kb on + strand, within Dshi_0576 at 566.439 kb on + strand, within Dshi_0576 at 566.449 kb on + strand, within Dshi_0576 at 566.458 kb on - strand, within Dshi_0576 at 566.494 kb on - strand, within Dshi_0576 at 566.499 kb on + strand, within Dshi_0576 at 566.508 kb on + strand, within Dshi_0576 at 566.516 kb on - strand, within Dshi_0576 at 566.516 kb on - strand, within Dshi_0576 at 566.534 kb on - strand, within Dshi_0576 at 566.552 kb on + strand at 566.573 kb on + strand at 566.596 kb on + strand at 566.599 kb on + strand at 566.604 kb on - strand at 566.615 kb on - strand at 566.615 kb on - strand at 566.699 kb on - strand at 566.716 kb on + strand at 566.716 kb on + strand at 566.719 kb on - strand at 566.724 kb on - strand at 566.756 kb on - strand at 566.766 kb on - strand at 566.771 kb on - strand at 566.808 kb on + strand at 566.808 kb on + strand at 566.816 kb on - strand at 566.823 kb on - strand at 566.844 kb on - strand at 566.848 kb on - strand at 566.848 kb on - strand at 566.848 kb on - strand at 566.848 kb on - strand at 566.888 kb on - strand, within Dshi_0577 at 566.888 kb on - strand, within Dshi_0577 at 566.888 kb on - strand, within Dshi_0577 at 566.953 kb on - strand at 566.998 kb on + strand, within Dshi_0577 at 567.012 kb on - strand, within Dshi_0577 at 567.016 kb on + strand, within Dshi_0577 at 567.039 kb on - strand, within Dshi_0577 at 567.120 kb on + strand, within Dshi_0577 at 567.135 kb on + strand, within Dshi_0577 at 567.143 kb on - strand, within Dshi_0577 at 567.184 kb on + strand, within Dshi_0577 at 567.217 kb on + strand, within Dshi_0577 at 567.275 kb on + strand, within Dshi_0577 at 567.275 kb on + strand, within Dshi_0577 at 567.278 kb on - strand, within Dshi_0577 at 567.315 kb on - strand, within Dshi_0577 at 567.317 kb on - strand, within Dshi_0577 at 567.319 kb on + strand, within Dshi_0577 at 567.319 kb on + strand, within Dshi_0577 at 567.325 kb on - strand, within Dshi_0577 at 567.327 kb on - strand, within Dshi_0577 at 567.327 kb on - strand, within Dshi_0577 at 567.360 kb on + strand, within Dshi_0577 at 567.361 kb on - strand, within Dshi_0577 at 567.387 kb on + strand, within Dshi_0577 at 567.392 kb on + strand, within Dshi_0577 at 567.510 kb on + strand, within Dshi_0577 at 567.529 kb on - strand, within Dshi_0577 at 567.534 kb on - strand, within Dshi_0577 at 567.589 kb on + strand, within Dshi_0577 at 567.590 kb on + strand, within Dshi_0577 at 567.590 kb on + strand, within Dshi_0577 at 567.598 kb on - strand, within Dshi_0577 at 567.598 kb on - strand, within Dshi_0577
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 564,857 + +1.2 564,912 + Dshi_0575 0.12 +2.6 564,954 + Dshi_0575 0.20 -4.3 564,962 - Dshi_0575 0.22 +0.2 564,967 - Dshi_0575 0.23 +0.4 564,986 + Dshi_0575 0.26 +0.2 565,016 + Dshi_0575 0.32 +0.2 565,027 + Dshi_0575 0.35 -0.1 565,029 + Dshi_0575 0.35 +0.4 565,079 + Dshi_0575 0.45 -2.8 565,087 - Dshi_0575 0.47 +0.2 565,100 + Dshi_0575 0.49 +1.2 565,100 + Dshi_0575 0.49 -2.8 565,108 - Dshi_0575 0.51 -1.0 565,116 + Dshi_0575 0.52 +0.2 565,125 - Dshi_0575 0.54 +2.6 565,150 + Dshi_0575 0.59 +1.2 565,150 + Dshi_0575 0.59 +0.2 565,157 + Dshi_0575 0.60 -2.2 565,157 + Dshi_0575 0.60 -1.2 565,157 + Dshi_0575 0.60 +0.2 565,157 + Dshi_0575 0.60 -3.1 565,157 + Dshi_0575 0.60 +0.2 565,158 - Dshi_0575 0.61 +0.2 565,190 + Dshi_0575 0.67 -0.0 565,190 + Dshi_0575 0.67 -3.0 565,198 - Dshi_0575 0.69 -2.1 565,198 - Dshi_0575 0.69 +0.2 565,260 - Dshi_0575 0.81 -1.8 565,261 + Dshi_0575 0.81 -2.6 565,269 - Dshi_0575 0.83 -0.3 565,385 + -0.4 565,393 - -0.5 565,412 - -0.3 565,422 - -1.3 565,437 - -2.3 565,491 - -0.5 565,499 - -1.6 565,506 + +1.2 565,521 - -2.5 565,523 + +0.1 565,531 - -0.1 565,531 - -1.7 565,571 + +0.8 565,571 + +1.8 565,584 - -1.3 565,587 + -1.2 565,587 + +0.0 565,587 + -0.6 565,595 - +2.2 565,595 - +0.2 565,595 - -1.8 565,595 - -0.2 565,595 - -1.0 565,595 - +0.2 565,618 - -0.8 565,618 - +2.2 565,627 + +0.1 565,635 - -1.1 565,635 - -0.8 565,635 - +0.0 565,642 - -2.9 565,677 - -2.2 565,687 - -0.8 565,701 + -2.8 565,764 - -2.1 565,823 - -0.4 565,848 - +0.2 565,849 + +3.0 565,869 - Dshi_0576 0.12 -1.4 565,882 - Dshi_0576 0.13 +1.6 565,884 + Dshi_0576 0.14 -0.6 565,892 - Dshi_0576 0.14 -1.2 565,913 - Dshi_0576 0.17 +0.4 565,949 + Dshi_0576 0.21 +1.2 565,983 - Dshi_0576 0.25 -0.5 565,983 - Dshi_0576 0.25 -0.8 565,992 + Dshi_0576 0.26 -1.5 566,015 - Dshi_0576 0.29 -0.8 566,079 + Dshi_0576 0.36 -0.9 566,091 + Dshi_0576 0.37 -3.2 566,099 - Dshi_0576 0.38 -1.2 566,099 - Dshi_0576 0.38 -3.0 566,099 - Dshi_0576 0.38 +2.0 566,108 + Dshi_0576 0.39 -1.5 566,108 + Dshi_0576 0.39 +0.5 566,116 - Dshi_0576 0.40 -2.6 566,127 + Dshi_0576 0.41 -0.8 566,128 - Dshi_0576 0.42 -1.8 566,145 - Dshi_0576 0.44 +0.6 566,177 + Dshi_0576 0.47 +0.5 566,224 + Dshi_0576 0.53 -0.1 566,228 - Dshi_0576 0.53 +0.2 566,279 + Dshi_0576 0.59 +1.2 566,287 - Dshi_0576 0.60 +1.8 566,349 + Dshi_0576 0.67 -0.9 566,380 - Dshi_0576 0.71 -1.1 566,397 + Dshi_0576 0.73 -0.2 566,413 + Dshi_0576 0.74 -1.4 566,439 + Dshi_0576 0.77 -2.6 566,449 + Dshi_0576 0.79 -1.2 566,458 - Dshi_0576 0.80 +1.2 566,494 - Dshi_0576 0.84 +0.2 566,499 + Dshi_0576 0.84 +1.0 566,508 + Dshi_0576 0.85 +0.4 566,516 - Dshi_0576 0.86 +0.2 566,516 - Dshi_0576 0.86 -1.0 566,534 - Dshi_0576 0.88 -0.5 566,552 + -2.7 566,573 + -0.1 566,596 + -0.3 566,599 + -3.5 566,604 - -1.1 566,615 - +0.8 566,615 - +0.2 566,699 - +1.4 566,716 + +0.0 566,716 + +2.8 566,719 - +0.2 566,724 - -1.2 566,756 - +1.8 566,766 - -1.8 566,771 - -1.1 566,808 + -1.3 566,808 + -0.1 566,816 - +1.2 566,823 - -1.9 566,844 - +1.7 566,848 - -4.1 566,848 - +0.3 566,848 - +0.2 566,848 - -0.5 566,888 - Dshi_0577 0.11 -0.3 566,888 - Dshi_0577 0.11 -3.1 566,888 - Dshi_0577 0.11 -1.0 566,953 - +1.2 566,998 + Dshi_0577 0.19 -0.8 567,012 - Dshi_0577 0.20 +0.2 567,016 + Dshi_0577 0.20 -0.6 567,039 - Dshi_0577 0.22 +2.2 567,120 + Dshi_0577 0.27 -0.1 567,135 + Dshi_0577 0.28 -1.8 567,143 - Dshi_0577 0.29 -0.7 567,184 + Dshi_0577 0.32 -2.3 567,217 + Dshi_0577 0.34 -0.3 567,275 + Dshi_0577 0.38 -1.8 567,275 + Dshi_0577 0.38 +1.0 567,278 - Dshi_0577 0.38 -1.6 567,315 - Dshi_0577 0.41 -0.2 567,317 - Dshi_0577 0.41 -1.5 567,319 + Dshi_0577 0.41 -2.6 567,319 + Dshi_0577 0.41 -1.6 567,325 - Dshi_0577 0.41 +1.2 567,327 - Dshi_0577 0.41 -0.0 567,327 - Dshi_0577 0.41 -0.3 567,360 + Dshi_0577 0.44 -1.3 567,361 - Dshi_0577 0.44 -1.3 567,387 + Dshi_0577 0.46 -0.3 567,392 + Dshi_0577 0.46 -0.1 567,510 + Dshi_0577 0.54 +0.2 567,529 - Dshi_0577 0.55 +2.2 567,534 - Dshi_0577 0.56 +1.2 567,589 + Dshi_0577 0.59 -3.9 567,590 + Dshi_0577 0.60 -1.0 567,590 + Dshi_0577 0.60 -3.3 567,598 - Dshi_0577 0.60 -1.3 567,598 - Dshi_0577 0.60 +1.0
Or see this region's nucleotide sequence