Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0510

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0509 and Dshi_0510 are separated by 181 nucleotidesDshi_0510 and Dshi_0511 are separated by 27 nucleotidesDshi_0511 and Dshi_0512 are separated by 11 nucleotides Dshi_0509: Dshi_0509 - hypothetical protein (RefSeq), at 494,625 to 495,407 _0509 Dshi_0510: Dshi_0510 - conserved hypothetical beta-lactamase (RefSeq), at 495,589 to 496,662 _0510 Dshi_0511: Dshi_0511 - hypothetical protein (RefSeq), at 496,690 to 496,893 _0511 Dshi_0512: Dshi_0512 - beta-lactamase domain protein (RefSeq), at 496,905 to 497,582 _0512 Position (kb) 495 496 497Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 494.623 kb on + strandat 494.655 kb on + strandat 494.697 kb on - strandat 494.742 kb on + strand, within Dshi_0509at 494.793 kb on + strand, within Dshi_0509at 494.866 kb on - strand, within Dshi_0509at 494.926 kb on + strand, within Dshi_0509at 494.948 kb on + strand, within Dshi_0509at 495.121 kb on - strand, within Dshi_0509at 495.131 kb on - strand, within Dshi_0509at 495.154 kb on - strand, within Dshi_0509at 495.156 kb on + strand, within Dshi_0509at 495.166 kb on - strand, within Dshi_0509at 495.203 kb on + strand, within Dshi_0509at 495.211 kb on - strand, within Dshi_0509at 495.213 kb on + strand, within Dshi_0509at 495.216 kb on + strand, within Dshi_0509at 495.218 kb on + strand, within Dshi_0509at 495.309 kb on + strand, within Dshi_0509at 495.391 kb on + strandat 495.526 kb on - strandat 495.625 kb on - strandat 495.638 kb on + strandat 495.657 kb on - strandat 495.667 kb on - strandat 495.684 kb on - strandat 495.701 kb on + strand, within Dshi_0510at 495.722 kb on - strand, within Dshi_0510at 495.722 kb on - strand, within Dshi_0510at 495.722 kb on - strand, within Dshi_0510at 495.881 kb on - strand, within Dshi_0510at 495.935 kb on - strand, within Dshi_0510at 496.038 kb on - strand, within Dshi_0510at 496.043 kb on - strand, within Dshi_0510at 496.047 kb on - strand, within Dshi_0510at 496.106 kb on - strand, within Dshi_0510at 496.110 kb on + strand, within Dshi_0510at 496.118 kb on - strand, within Dshi_0510at 496.151 kb on - strand, within Dshi_0510at 496.151 kb on - strand, within Dshi_0510at 496.202 kb on + strand, within Dshi_0510at 496.223 kb on + strand, within Dshi_0510at 496.231 kb on - strand, within Dshi_0510at 496.235 kb on - strand, within Dshi_0510at 496.242 kb on - strand, within Dshi_0510at 496.336 kb on - strand, within Dshi_0510at 496.370 kb on - strand, within Dshi_0510at 496.422 kb on + strand, within Dshi_0510at 496.431 kb on + strand, within Dshi_0510at 496.437 kb on + strand, within Dshi_0510at 496.439 kb on - strand, within Dshi_0510at 496.470 kb on - strand, within Dshi_0510at 496.485 kb on + strand, within Dshi_0510at 496.539 kb on + strand, within Dshi_0510at 496.566 kb on + strandat 496.634 kb on + strandat 496.693 kb on + strandat 496.722 kb on + strand, within Dshi_0511at 496.735 kb on + strand, within Dshi_0511at 496.784 kb on - strand, within Dshi_0511at 496.853 kb on + strand, within Dshi_0511at 496.878 kb on + strandat 496.929 kb on - strandat 496.936 kb on + strandat 496.944 kb on - strandat 496.964 kb on - strandat 497.031 kb on - strand, within Dshi_0512at 497.084 kb on + strand, within Dshi_0512at 497.092 kb on - strand, within Dshi_0512at 497.097 kb on - strand, within Dshi_0512at 497.125 kb on + strand, within Dshi_0512at 497.133 kb on - strand, within Dshi_0512at 497.133 kb on - strand, within Dshi_0512at 497.133 kb on - strand, within Dshi_0512at 497.133 kb on - strand, within Dshi_0512at 497.186 kb on + strand, within Dshi_0512at 497.186 kb on + strand, within Dshi_0512at 497.191 kb on + strand, within Dshi_0512at 497.201 kb on + strand, within Dshi_0512at 497.233 kb on - strand, within Dshi_0512at 497.274 kb on - strand, within Dshi_0512at 497.291 kb on + strand, within Dshi_0512at 497.299 kb on - strand, within Dshi_0512at 497.326 kb on + strand, within Dshi_0512at 497.378 kb on + strand, within Dshi_0512at 497.489 kb on + strand, within Dshi_0512at 497.497 kb on - strand, within Dshi_0512at 497.497 kb on - strand, within Dshi_0512at 497.529 kb on + strandat 497.545 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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494,623 + +1.6
494,655 + +0.5
494,697 - -0.5
494,742 + Dshi_0509 0.15 -0.9
494,793 + Dshi_0509 0.21 -0.0
494,866 - Dshi_0509 0.31 +0.6
494,926 + Dshi_0509 0.38 -0.5
494,948 + Dshi_0509 0.41 +0.4
495,121 - Dshi_0509 0.63 -0.2
495,131 - Dshi_0509 0.65 -0.2
495,154 - Dshi_0509 0.68 +2.9
495,156 + Dshi_0509 0.68 -1.0
495,166 - Dshi_0509 0.69 -0.3
495,203 + Dshi_0509 0.74 -0.4
495,211 - Dshi_0509 0.75 -0.2
495,213 + Dshi_0509 0.75 -2.3
495,216 + Dshi_0509 0.75 +0.3
495,218 + Dshi_0509 0.76 -2.2
495,309 + Dshi_0509 0.87 -0.4
495,391 + +0.6
495,526 - +0.5
495,625 - +0.7
495,638 + +1.0
495,657 - +0.7
495,667 - +0.9
495,684 - +0.6
495,701 + Dshi_0510 0.10 -0.6
495,722 - Dshi_0510 0.12 +1.2
495,722 - Dshi_0510 0.12 -0.2
495,722 - Dshi_0510 0.12 -0.4
495,881 - Dshi_0510 0.27 -0.5
495,935 - Dshi_0510 0.32 +0.2
496,038 - Dshi_0510 0.42 +1.7
496,043 - Dshi_0510 0.42 -0.6
496,047 - Dshi_0510 0.43 -0.2
496,106 - Dshi_0510 0.48 -1.8
496,110 + Dshi_0510 0.49 +1.1
496,118 - Dshi_0510 0.49 -0.3
496,151 - Dshi_0510 0.52 -1.5
496,151 - Dshi_0510 0.52 +0.4
496,202 + Dshi_0510 0.57 +0.3
496,223 + Dshi_0510 0.59 +0.9
496,231 - Dshi_0510 0.60 -0.1
496,235 - Dshi_0510 0.60 +0.1
496,242 - Dshi_0510 0.61 -0.0
496,336 - Dshi_0510 0.70 +0.1
496,370 - Dshi_0510 0.73 +0.3
496,422 + Dshi_0510 0.78 +0.2
496,431 + Dshi_0510 0.78 -0.6
496,437 + Dshi_0510 0.79 +0.1
496,439 - Dshi_0510 0.79 -0.0
496,470 - Dshi_0510 0.82 +0.2
496,485 + Dshi_0510 0.83 +0.6
496,539 + Dshi_0510 0.88 +2.6
496,566 + +0.5
496,634 + -1.3
496,693 + +0.1
496,722 + Dshi_0511 0.16 -0.4
496,735 + Dshi_0511 0.22 -0.6
496,784 - Dshi_0511 0.46 +0.3
496,853 + Dshi_0511 0.80 -0.3
496,878 + +0.7
496,929 - -1.1
496,936 + -3.3
496,944 - +0.1
496,964 - +0.3
497,031 - Dshi_0512 0.19 -0.6
497,084 + Dshi_0512 0.26 -0.3
497,092 - Dshi_0512 0.28 -0.8
497,097 - Dshi_0512 0.28 -0.3
497,125 + Dshi_0512 0.32 +0.1
497,133 - Dshi_0512 0.34 +1.8
497,133 - Dshi_0512 0.34 -0.1
497,133 - Dshi_0512 0.34 -0.6
497,133 - Dshi_0512 0.34 +0.1
497,186 + Dshi_0512 0.41 +0.3
497,186 + Dshi_0512 0.41 -0.1
497,191 + Dshi_0512 0.42 +1.6
497,201 + Dshi_0512 0.44 +0.1
497,233 - Dshi_0512 0.48 -0.1
497,274 - Dshi_0512 0.54 -1.4
497,291 + Dshi_0512 0.57 +2.4
497,299 - Dshi_0512 0.58 +0.6
497,326 + Dshi_0512 0.62 -0.0
497,378 + Dshi_0512 0.70 +2.1
497,489 + Dshi_0512 0.86 -0.9
497,497 - Dshi_0512 0.87 +0.1
497,497 - Dshi_0512 0.87 -1.1
497,529 + -0.5
497,545 - -0.2

Or see this region's nucleotide sequence