Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0503

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0501 and Dshi_0502 are separated by 115 nucleotidesDshi_0502 and Dshi_0503 are separated by 58 nucleotidesDshi_0503 and Dshi_0504 are separated by 3 nucleotides Dshi_0501: Dshi_0501 - hypothetical protein (RefSeq), at 485,653 to 486,264 _0501 Dshi_0502: Dshi_0502 - cytoplasmic chaperone TorD family protein (RefSeq), at 486,380 to 487,042 _0502 Dshi_0503: Dshi_0503 - twin-arginine translocation pathway signal (RefSeq), at 487,101 to 487,310 _0503 Dshi_0504: Dshi_0504 - molybdopterin oxidoreductase (RefSeq), at 487,314 to 490,274 _0504 Position (kb) 487 488Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 486.126 kb on + strand, within Dshi_0501at 486.134 kb on - strand, within Dshi_0501at 486.199 kb on + strand, within Dshi_0501at 486.214 kb on - strandat 486.267 kb on + strandat 486.371 kb on + strandat 486.393 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.403 kb on + strandat 486.403 kb on + strandat 486.403 kb on + strandat 486.406 kb on - strandat 486.406 kb on - strandat 486.406 kb on - strandat 486.406 kb on - strandat 486.406 kb on - strandat 486.406 kb on - strandat 486.411 kb on - strandat 486.411 kb on - strandat 486.511 kb on - strand, within Dshi_0502at 486.533 kb on + strand, within Dshi_0502at 486.533 kb on + strand, within Dshi_0502at 486.544 kb on + strand, within Dshi_0502at 486.544 kb on + strand, within Dshi_0502at 486.552 kb on - strand, within Dshi_0502at 486.554 kb on + strand, within Dshi_0502at 486.559 kb on + strand, within Dshi_0502at 486.562 kb on - strand, within Dshi_0502at 486.624 kb on - strand, within Dshi_0502at 486.646 kb on + strand, within Dshi_0502at 486.691 kb on - strand, within Dshi_0502at 486.721 kb on + strand, within Dshi_0502at 486.734 kb on - strand, within Dshi_0502at 486.824 kb on + strand, within Dshi_0502at 486.832 kb on - strand, within Dshi_0502at 486.837 kb on - strand, within Dshi_0502at 486.837 kb on - strand, within Dshi_0502at 486.840 kb on + strand, within Dshi_0502at 486.848 kb on - strand, within Dshi_0502at 486.887 kb on + strand, within Dshi_0502at 486.902 kb on + strand, within Dshi_0502at 486.939 kb on + strand, within Dshi_0502at 486.947 kb on - strand, within Dshi_0502at 486.978 kb on - strandat 487.022 kb on - strandat 487.087 kb on + strandat 487.170 kb on + strand, within Dshi_0503at 487.178 kb on - strand, within Dshi_0503at 487.179 kb on + strand, within Dshi_0503at 487.220 kb on + strand, within Dshi_0503at 487.228 kb on - strand, within Dshi_0503at 487.272 kb on + strand, within Dshi_0503at 487.272 kb on + strand, within Dshi_0503at 487.273 kb on - strand, within Dshi_0503at 487.319 kb on + strandat 487.395 kb on - strandat 487.417 kb on + strandat 487.425 kb on - strandat 487.425 kb on - strandat 487.435 kb on - strandat 487.459 kb on - strandat 487.489 kb on - strandat 487.540 kb on - strandat 487.561 kb on - strandat 487.561 kb on - strandat 487.605 kb on - strandat 487.615 kb on - strand, within Dshi_0504at 487.671 kb on + strand, within Dshi_0504at 487.944 kb on + strand, within Dshi_0504at 487.951 kb on - strand, within Dshi_0504at 487.953 kb on - strand, within Dshi_0504at 487.972 kb on - strand, within Dshi_0504at 488.159 kb on + strand, within Dshi_0504at 488.159 kb on - strand, within Dshi_0504at 488.182 kb on - strand, within Dshi_0504at 488.256 kb on - strand, within Dshi_0504at 488.261 kb on - strand, within Dshi_0504at 488.270 kb on + strand, within Dshi_0504at 488.308 kb on - strand, within Dshi_0504

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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486,126 + Dshi_0501 0.77 -1.0
486,134 - Dshi_0501 0.79 +1.8
486,199 + Dshi_0501 0.89 -1.5
486,214 - -0.5
486,267 + -0.4
486,371 + +0.2
486,393 + +0.9
486,398 + +0.1
486,398 + -0.5
486,398 + -0.2
486,398 + +0.5
486,398 + -0.5
486,398 + +0.4
486,398 + -0.6
486,398 + -0.7
486,403 + -1.7
486,403 + -0.8
486,403 + +0.2
486,406 - -0.3
486,406 - +0.9
486,406 - +1.8
486,406 - -2.6
486,406 - +0.3
486,406 - -0.8
486,411 - -0.9
486,411 - -0.1
486,511 - Dshi_0502 0.20 -0.8
486,533 + Dshi_0502 0.23 -0.7
486,533 + Dshi_0502 0.23 -1.3
486,544 + Dshi_0502 0.25 -0.1
486,544 + Dshi_0502 0.25 +0.6
486,552 - Dshi_0502 0.26 -2.8
486,554 + Dshi_0502 0.26 -1.8
486,559 + Dshi_0502 0.27 -0.5
486,562 - Dshi_0502 0.27 +0.1
486,624 - Dshi_0502 0.37 +1.6
486,646 + Dshi_0502 0.40 -0.3
486,691 - Dshi_0502 0.47 +0.6
486,721 + Dshi_0502 0.51 +0.4
486,734 - Dshi_0502 0.53 +0.0
486,824 + Dshi_0502 0.67 -0.5
486,832 - Dshi_0502 0.68 -0.8
486,837 - Dshi_0502 0.69 +1.8
486,837 - Dshi_0502 0.69 -0.9
486,840 + Dshi_0502 0.69 +0.9
486,848 - Dshi_0502 0.71 -0.3
486,887 + Dshi_0502 0.76 +1.2
486,902 + Dshi_0502 0.79 -1.0
486,939 + Dshi_0502 0.84 +0.0
486,947 - Dshi_0502 0.86 +0.7
486,978 - +0.3
487,022 - -0.8
487,087 + +0.8
487,170 + Dshi_0503 0.33 -0.1
487,178 - Dshi_0503 0.37 -0.1
487,179 + Dshi_0503 0.37 +0.0
487,220 + Dshi_0503 0.57 +0.1
487,228 - Dshi_0503 0.60 +0.4
487,272 + Dshi_0503 0.81 -2.8
487,272 + Dshi_0503 0.81 +2.3
487,273 - Dshi_0503 0.82 -0.7
487,319 + -2.1
487,395 - +1.5
487,417 + -0.4
487,425 - -0.4
487,425 - +1.0
487,435 - -2.2
487,459 - -0.4
487,489 - -1.4
487,540 - +0.4
487,561 - +1.3
487,561 - +0.0
487,605 - -0.6
487,615 - Dshi_0504 0.10 +0.0
487,671 + Dshi_0504 0.12 +0.7
487,944 + Dshi_0504 0.21 -0.6
487,951 - Dshi_0504 0.22 -1.2
487,953 - Dshi_0504 0.22 +0.4
487,972 - Dshi_0504 0.22 +0.5
488,159 + Dshi_0504 0.29 -0.6
488,159 - Dshi_0504 0.29 -0.1
488,182 - Dshi_0504 0.29 +0.7
488,256 - Dshi_0504 0.32 -0.6
488,261 - Dshi_0504 0.32 +0.4
488,270 + Dshi_0504 0.32 +0.6
488,308 - Dshi_0504 0.34 +2.7

Or see this region's nucleotide sequence