Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0471

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0469 and Dshi_0470 are separated by 63 nucleotidesDshi_0470 and Dshi_0471 are separated by 62 nucleotidesDshi_0471 and Dshi_0472 are separated by 25 nucleotidesDshi_0472 and Dshi_0473 are separated by 167 nucleotides Dshi_0469: Dshi_0469 - hypothetical protein (RefSeq), at 455,168 to 455,518 _0469 Dshi_0470: Dshi_0470 - Sulphur oxidation protein SoxZ (RefSeq), at 455,582 to 456,454 _0470 Dshi_0471: Dshi_0471 - beta-lactamase domain protein (RefSeq), at 456,517 to 457,557 _0471 Dshi_0472: Dshi_0472 - hypothetical protein (RefSeq), at 457,583 to 458,197 _0472 Dshi_0473: Dshi_0473 - Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase (RefSeq), at 458,365 to 459,477 _0473 Position (kb) 456 457 458Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 455.639 kb on + strandat 455.729 kb on + strand, within Dshi_0470at 455.763 kb on - strand, within Dshi_0470at 455.791 kb on + strand, within Dshi_0470at 455.815 kb on + strand, within Dshi_0470at 455.815 kb on + strand, within Dshi_0470at 455.815 kb on + strand, within Dshi_0470at 455.865 kb on + strand, within Dshi_0470at 455.908 kb on + strand, within Dshi_0470at 455.921 kb on - strand, within Dshi_0470at 456.036 kb on - strand, within Dshi_0470at 456.043 kb on - strand, within Dshi_0470at 456.072 kb on + strand, within Dshi_0470at 456.075 kb on + strand, within Dshi_0470at 456.082 kb on - strand, within Dshi_0470at 456.093 kb on - strand, within Dshi_0470at 456.170 kb on - strand, within Dshi_0470at 456.190 kb on - strand, within Dshi_0470at 456.218 kb on - strand, within Dshi_0470at 456.225 kb on + strand, within Dshi_0470at 456.261 kb on - strand, within Dshi_0470at 456.346 kb on - strand, within Dshi_0470at 456.411 kb on + strandat 456.424 kb on - strandat 456.473 kb on + strandat 456.496 kb on + strandat 456.501 kb on + strandat 456.506 kb on + strandat 456.536 kb on + strandat 456.544 kb on - strandat 456.544 kb on - strandat 456.587 kb on + strandat 456.632 kb on - strand, within Dshi_0471at 456.653 kb on + strand, within Dshi_0471at 456.661 kb on - strand, within Dshi_0471at 456.672 kb on - strand, within Dshi_0471at 456.696 kb on + strand, within Dshi_0471at 456.731 kb on - strand, within Dshi_0471at 456.744 kb on + strand, within Dshi_0471at 456.893 kb on + strand, within Dshi_0471at 456.970 kb on + strand, within Dshi_0471at 456.981 kb on + strand, within Dshi_0471at 456.988 kb on + strand, within Dshi_0471at 457.004 kb on + strand, within Dshi_0471at 457.124 kb on + strand, within Dshi_0471at 457.132 kb on - strand, within Dshi_0471at 457.134 kb on + strand, within Dshi_0471at 457.142 kb on - strand, within Dshi_0471at 457.169 kb on + strand, within Dshi_0471at 457.173 kb on + strand, within Dshi_0471at 457.177 kb on - strand, within Dshi_0471at 457.248 kb on + strand, within Dshi_0471at 457.248 kb on + strand, within Dshi_0471at 457.263 kb on + strand, within Dshi_0471at 457.291 kb on + strand, within Dshi_0471at 457.325 kb on + strand, within Dshi_0471at 457.338 kb on - strand, within Dshi_0471at 457.351 kb on + strand, within Dshi_0471at 457.351 kb on + strand, within Dshi_0471at 457.351 kb on + strand, within Dshi_0471at 457.505 kb on + strandat 457.513 kb on - strandat 457.566 kb on - strandat 457.620 kb on + strandat 457.645 kb on + strand, within Dshi_0472at 457.647 kb on - strand, within Dshi_0472at 457.738 kb on + strand, within Dshi_0472at 457.746 kb on - strand, within Dshi_0472at 457.857 kb on - strand, within Dshi_0472at 457.866 kb on + strand, within Dshi_0472at 457.900 kb on + strand, within Dshi_0472at 457.928 kb on + strand, within Dshi_0472at 457.931 kb on - strand, within Dshi_0472at 457.987 kb on - strand, within Dshi_0472at 458.035 kb on + strand, within Dshi_0472at 458.035 kb on + strand, within Dshi_0472at 458.050 kb on + strand, within Dshi_0472at 458.069 kb on + strand, within Dshi_0472at 458.069 kb on + strand, within Dshi_0472at 458.069 kb on + strand, within Dshi_0472at 458.077 kb on - strand, within Dshi_0472at 458.077 kb on - strand, within Dshi_0472at 458.077 kb on - strand, within Dshi_0472at 458.079 kb on + strand, within Dshi_0472at 458.079 kb on + strand, within Dshi_0472at 458.079 kb on + strand, within Dshi_0472at 458.079 kb on + strand, within Dshi_0472at 458.087 kb on - strand, within Dshi_0472at 458.106 kb on + strand, within Dshi_0472at 458.122 kb on + strand, within Dshi_0472at 458.135 kb on - strand, within Dshi_0472at 458.154 kb on + strandat 458.162 kb on - strandat 458.175 kb on + strandat 458.180 kb on + strandat 458.187 kb on + strandat 458.187 kb on + strandat 458.188 kb on - strandat 458.188 kb on - strandat 458.195 kb on - strandat 458.195 kb on - strandat 458.204 kb on + strandat 458.212 kb on - strandat 458.214 kb on + strandat 458.217 kb on - strandat 458.217 kb on - strandat 458.217 kb on - strandat 458.224 kb on + strandat 458.239 kb on + strandat 458.239 kb on + strandat 458.239 kb on + strandat 458.239 kb on + strandat 458.247 kb on - strandat 458.247 kb on - strandat 458.258 kb on + strandat 458.278 kb on - strandat 458.283 kb on - strandat 458.283 kb on - strandat 458.287 kb on + strandat 458.301 kb on - strandat 458.310 kb on + strandat 458.312 kb on - strandat 458.312 kb on - strandat 458.314 kb on + strandat 458.331 kb on - strandat 458.338 kb on + strandat 458.346 kb on - strandat 458.353 kb on - strandat 458.387 kb on - strandat 458.435 kb on + strandat 458.435 kb on + strandat 458.443 kb on - strandat 458.464 kb on + strandat 458.489 kb on - strand, within Dshi_0473at 458.524 kb on - strand, within Dshi_0473at 458.539 kb on + strand, within Dshi_0473at 458.547 kb on - strand, within Dshi_0473

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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455,639 + -1.6
455,729 + Dshi_0470 0.17 -0.2
455,763 - Dshi_0470 0.21 +0.2
455,791 + Dshi_0470 0.24 +1.2
455,815 + Dshi_0470 0.27 -1.0
455,815 + Dshi_0470 0.27 -2.1
455,815 + Dshi_0470 0.27 -0.1
455,865 + Dshi_0470 0.32 -1.5
455,908 + Dshi_0470 0.37 -0.2
455,921 - Dshi_0470 0.39 +0.8
456,036 - Dshi_0470 0.52 +0.0
456,043 - Dshi_0470 0.53 -0.8
456,072 + Dshi_0470 0.56 -0.1
456,075 + Dshi_0470 0.56 -0.5
456,082 - Dshi_0470 0.57 -0.5
456,093 - Dshi_0470 0.59 +0.7
456,170 - Dshi_0470 0.67 -0.6
456,190 - Dshi_0470 0.70 -0.8
456,218 - Dshi_0470 0.73 -0.5
456,225 + Dshi_0470 0.74 -0.4
456,261 - Dshi_0470 0.78 -0.3
456,346 - Dshi_0470 0.88 -1.0
456,411 + -0.2
456,424 - -0.3
456,473 + +0.1
456,496 + +0.5
456,501 + +1.2
456,506 + -1.0
456,536 + +0.8
456,544 - +1.4
456,544 - +0.3
456,587 + -0.4
456,632 - Dshi_0471 0.11 +1.6
456,653 + Dshi_0471 0.13 +1.2
456,661 - Dshi_0471 0.14 -0.4
456,672 - Dshi_0471 0.15 +0.5
456,696 + Dshi_0471 0.17 +1.8
456,731 - Dshi_0471 0.21 +0.1
456,744 + Dshi_0471 0.22 +1.1
456,893 + Dshi_0471 0.36 -0.4
456,970 + Dshi_0471 0.44 -0.7
456,981 + Dshi_0471 0.45 -0.6
456,988 + Dshi_0471 0.45 -1.0
457,004 + Dshi_0471 0.47 -0.0
457,124 + Dshi_0471 0.58 -0.1
457,132 - Dshi_0471 0.59 -1.4
457,134 + Dshi_0471 0.59 +0.2
457,142 - Dshi_0471 0.60 -0.6
457,169 + Dshi_0471 0.63 -0.4
457,173 + Dshi_0471 0.63 -0.1
457,177 - Dshi_0471 0.63 -0.1
457,248 + Dshi_0471 0.70 +0.0
457,248 + Dshi_0471 0.70 +0.4
457,263 + Dshi_0471 0.72 -0.5
457,291 + Dshi_0471 0.74 +0.5
457,325 + Dshi_0471 0.78 -0.2
457,338 - Dshi_0471 0.79 +0.5
457,351 + Dshi_0471 0.80 -0.5
457,351 + Dshi_0471 0.80 -2.1
457,351 + Dshi_0471 0.80 -1.0
457,505 + +0.4
457,513 - -0.1
457,566 - +0.0
457,620 + -0.4
457,645 + Dshi_0472 0.10 -0.4
457,647 - Dshi_0472 0.10 +0.1
457,738 + Dshi_0472 0.25 -0.1
457,746 - Dshi_0472 0.27 -0.5
457,857 - Dshi_0472 0.45 -0.6
457,866 + Dshi_0472 0.46 -1.5
457,900 + Dshi_0472 0.52 -0.0
457,928 + Dshi_0472 0.56 +0.9
457,931 - Dshi_0472 0.57 -1.0
457,987 - Dshi_0472 0.66 -0.5
458,035 + Dshi_0472 0.73 +0.5
458,035 + Dshi_0472 0.73 +0.6
458,050 + Dshi_0472 0.76 +0.0
458,069 + Dshi_0472 0.79 +0.2
458,069 + Dshi_0472 0.79 -1.3
458,069 + Dshi_0472 0.79 -0.0
458,077 - Dshi_0472 0.80 -0.6
458,077 - Dshi_0472 0.80 +0.6
458,077 - Dshi_0472 0.80 +1.0
458,079 + Dshi_0472 0.81 -0.8
458,079 + Dshi_0472 0.81 -0.3
458,079 + Dshi_0472 0.81 -0.2
458,079 + Dshi_0472 0.81 -0.0
458,087 - Dshi_0472 0.82 -0.2
458,106 + Dshi_0472 0.85 +0.3
458,122 + Dshi_0472 0.88 -0.2
458,135 - Dshi_0472 0.90 -1.2
458,154 + -0.9
458,162 - -0.5
458,175 + +0.6
458,180 + -0.9
458,187 + +0.4
458,187 + +1.3
458,188 - -0.9
458,188 - -0.2
458,195 - +0.5
458,195 - -0.9
458,204 + +1.5
458,212 - +0.0
458,214 + -2.1
458,217 - -1.1
458,217 - -0.3
458,217 - -0.5
458,224 + -0.4
458,239 + -0.6
458,239 + -0.5
458,239 + -0.5
458,239 + -0.3
458,247 - +0.0
458,247 - -1.0
458,258 + -3.6
458,278 - -0.6
458,283 - -0.2
458,283 - -0.2
458,287 + -0.5
458,301 - -1.0
458,310 + +0.5
458,312 - -0.0
458,312 - +0.5
458,314 + -0.6
458,331 - -0.8
458,338 + -0.4
458,346 - +0.2
458,353 - +0.7
458,387 - +2.1
458,435 + +1.0
458,435 + +0.2
458,443 - +3.1
458,464 + +2.3
458,489 - Dshi_0473 0.11 +0.1
458,524 - Dshi_0473 0.14 -0.4
458,539 + Dshi_0473 0.16 -0.0
458,547 - Dshi_0473 0.16 +0.2

Or see this region's nucleotide sequence