Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0455 and Dshi_0456 are separated by 92 nucleotides Dshi_0456 and Dshi_0457 overlap by 4 nucleotides Dshi_0457 and Dshi_0458 overlap by 4 nucleotides
Dshi_0455: Dshi_0455 - hypothetical protein (RefSeq), at 442,029 to 442,946
_0455
Dshi_0456: Dshi_0456 - ATPase associated with various cellular activities AAA_3 (RefSeq), at 443,039 to 443,995
_0456
Dshi_0457: Dshi_0457 - protein of unknown function DUF58 (RefSeq), at 443,992 to 444,900
_0457
Dshi_0458: Dshi_0458 - hypothetical protein (RefSeq), at 444,897 to 445,268
_0458
Position (kb) 443
444 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 442.070 kb on + strand at 442.107 kb on - strand at 442.112 kb on + strand at 442.200 kb on + strand, within Dshi_0455 at 442.204 kb on + strand, within Dshi_0455 at 442.211 kb on + strand, within Dshi_0455 at 442.212 kb on - strand, within Dshi_0455 at 442.212 kb on - strand, within Dshi_0455 at 442.212 kb on - strand, within Dshi_0455 at 442.218 kb on - strand, within Dshi_0455 at 442.233 kb on - strand, within Dshi_0455 at 442.289 kb on - strand, within Dshi_0455 at 442.315 kb on + strand, within Dshi_0455 at 442.315 kb on + strand, within Dshi_0455 at 442.323 kb on - strand, within Dshi_0455 at 442.323 kb on - strand, within Dshi_0455 at 442.323 kb on - strand, within Dshi_0455 at 442.337 kb on + strand, within Dshi_0455 at 442.345 kb on - strand, within Dshi_0455 at 442.345 kb on - strand, within Dshi_0455 at 442.345 kb on - strand, within Dshi_0455 at 442.372 kb on + strand, within Dshi_0455 at 442.393 kb on - strand, within Dshi_0455 at 442.407 kb on + strand, within Dshi_0455 at 442.434 kb on + strand, within Dshi_0455 at 442.435 kb on + strand, within Dshi_0455 at 442.442 kb on - strand, within Dshi_0455 at 442.454 kb on - strand, within Dshi_0455 at 442.469 kb on + strand, within Dshi_0455 at 442.477 kb on - strand, within Dshi_0455 at 442.485 kb on + strand, within Dshi_0455 at 442.498 kb on - strand, within Dshi_0455 at 442.509 kb on + strand, within Dshi_0455 at 442.509 kb on + strand, within Dshi_0455 at 442.509 kb on + strand, within Dshi_0455 at 442.509 kb on + strand, within Dshi_0455 at 442.517 kb on - strand, within Dshi_0455 at 442.517 kb on - strand, within Dshi_0455 at 442.522 kb on + strand, within Dshi_0455 at 442.553 kb on + strand, within Dshi_0455 at 442.561 kb on - strand, within Dshi_0455 at 442.577 kb on + strand, within Dshi_0455 at 442.582 kb on - strand, within Dshi_0455 at 442.601 kb on + strand, within Dshi_0455 at 442.631 kb on + strand, within Dshi_0455 at 442.640 kb on - strand, within Dshi_0455 at 442.653 kb on + strand, within Dshi_0455 at 442.653 kb on + strand, within Dshi_0455 at 442.661 kb on - strand, within Dshi_0455 at 442.664 kb on + strand, within Dshi_0455 at 442.677 kb on - strand, within Dshi_0455 at 442.680 kb on + strand, within Dshi_0455 at 442.688 kb on - strand, within Dshi_0455 at 442.749 kb on - strand, within Dshi_0455 at 442.791 kb on - strand, within Dshi_0455 at 442.803 kb on + strand, within Dshi_0455 at 442.803 kb on + strand, within Dshi_0455 at 442.804 kb on + strand, within Dshi_0455 at 442.811 kb on - strand, within Dshi_0455 at 442.811 kb on - strand, within Dshi_0455 at 442.819 kb on - strand, within Dshi_0455 at 442.824 kb on - strand, within Dshi_0455 at 442.893 kb on - strand at 442.895 kb on + strand at 442.895 kb on + strand at 442.903 kb on - strand at 442.953 kb on + strand at 442.984 kb on - strand at 443.023 kb on + strand at 443.031 kb on - strand at 443.033 kb on + strand at 443.056 kb on - strand at 443.123 kb on - strand at 443.205 kb on - strand, within Dshi_0456 at 443.207 kb on + strand, within Dshi_0456 at 443.256 kb on - strand, within Dshi_0456 at 443.256 kb on - strand, within Dshi_0456 at 443.304 kb on + strand, within Dshi_0456 at 443.311 kb on + strand, within Dshi_0456 at 443.311 kb on + strand, within Dshi_0456 at 443.342 kb on + strand, within Dshi_0456 at 443.352 kb on + strand, within Dshi_0456 at 443.376 kb on + strand, within Dshi_0456 at 443.379 kb on - strand, within Dshi_0456 at 443.421 kb on - strand, within Dshi_0456 at 443.421 kb on - strand, within Dshi_0456 at 443.431 kb on + strand, within Dshi_0456 at 443.432 kb on - strand, within Dshi_0456 at 443.445 kb on - strand, within Dshi_0456 at 443.563 kb on + strand, within Dshi_0456 at 443.578 kb on + strand, within Dshi_0456 at 443.634 kb on - strand, within Dshi_0456 at 443.636 kb on + strand, within Dshi_0456 at 443.637 kb on + strand, within Dshi_0456 at 443.637 kb on + strand, within Dshi_0456 at 443.637 kb on + strand, within Dshi_0456 at 443.639 kb on - strand, within Dshi_0456 at 443.671 kb on - strand, within Dshi_0456 at 443.683 kb on - strand, within Dshi_0456 at 443.685 kb on + strand, within Dshi_0456 at 443.685 kb on + strand, within Dshi_0456 at 443.693 kb on - strand, within Dshi_0456 at 443.721 kb on + strand, within Dshi_0456 at 443.737 kb on + strand, within Dshi_0456 at 443.745 kb on - strand, within Dshi_0456 at 443.772 kb on + strand, within Dshi_0456 at 443.790 kb on + strand, within Dshi_0456 at 443.797 kb on + strand, within Dshi_0456 at 443.801 kb on + strand, within Dshi_0456 at 443.806 kb on + strand, within Dshi_0456 at 443.806 kb on + strand, within Dshi_0456 at 443.812 kb on + strand, within Dshi_0456 at 443.814 kb on - strand, within Dshi_0456 at 443.847 kb on + strand, within Dshi_0456 at 443.863 kb on + strand, within Dshi_0456 at 443.884 kb on - strand, within Dshi_0456 at 443.912 kb on + strand at 443.912 kb on + strand at 443.948 kb on - strand at 443.979 kb on - strand at 444.020 kb on - strand at 444.054 kb on + strand at 444.127 kb on - strand, within Dshi_0457 at 444.203 kb on - strand, within Dshi_0457 at 444.291 kb on + strand, within Dshi_0457 at 444.294 kb on - strand, within Dshi_0457 at 444.294 kb on - strand, within Dshi_0457 at 444.294 kb on - strand, within Dshi_0457 at 444.294 kb on - strand, within Dshi_0457 at 444.299 kb on - strand, within Dshi_0457 at 444.372 kb on - strand, within Dshi_0457 at 444.389 kb on - strand, within Dshi_0457 at 444.420 kb on - strand, within Dshi_0457 at 444.526 kb on - strand, within Dshi_0457 at 444.541 kb on + strand, within Dshi_0457 at 444.559 kb on + strand, within Dshi_0457 at 444.688 kb on - strand, within Dshi_0457 at 444.712 kb on - strand, within Dshi_0457 at 444.801 kb on - strand, within Dshi_0457 at 444.864 kb on - strand at 444.886 kb on - strand at 444.946 kb on + strand, within Dshi_0458 at 444.977 kb on + strand, within Dshi_0458 at 444.982 kb on + strand, within Dshi_0458 at 444.992 kb on + strand, within Dshi_0458
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 442,070 + -0.9 442,107 - -0.3 442,112 + -1.0 442,200 + Dshi_0455 0.19 -2.9 442,204 + Dshi_0455 0.19 -2.8 442,211 + Dshi_0455 0.20 +0.5 442,212 - Dshi_0455 0.20 -0.2 442,212 - Dshi_0455 0.20 -1.0 442,212 - Dshi_0455 0.20 -0.3 442,218 - Dshi_0455 0.21 -1.4 442,233 - Dshi_0455 0.22 -0.1 442,289 - Dshi_0455 0.28 -1.4 442,315 + Dshi_0455 0.31 -0.3 442,315 + Dshi_0455 0.31 -0.8 442,323 - Dshi_0455 0.32 -0.7 442,323 - Dshi_0455 0.32 +1.1 442,323 - Dshi_0455 0.32 -0.3 442,337 + Dshi_0455 0.34 +0.4 442,345 - Dshi_0455 0.34 -4.4 442,345 - Dshi_0455 0.34 +3.2 442,345 - Dshi_0455 0.34 +0.0 442,372 + Dshi_0455 0.37 -0.2 442,393 - Dshi_0455 0.40 +1.5 442,407 + Dshi_0455 0.41 +1.2 442,434 + Dshi_0455 0.44 +2.2 442,435 + Dshi_0455 0.44 +1.1 442,442 - Dshi_0455 0.45 +0.5 442,454 - Dshi_0455 0.46 +0.4 442,469 + Dshi_0455 0.48 -1.0 442,477 - Dshi_0455 0.49 -0.5 442,485 + Dshi_0455 0.50 +0.4 442,498 - Dshi_0455 0.51 -0.5 442,509 + Dshi_0455 0.52 -1.1 442,509 + Dshi_0455 0.52 -2.1 442,509 + Dshi_0455 0.52 -0.7 442,509 + Dshi_0455 0.52 +1.2 442,517 - Dshi_0455 0.53 -0.3 442,517 - Dshi_0455 0.53 +0.2 442,522 + Dshi_0455 0.54 -1.2 442,553 + Dshi_0455 0.57 +0.3 442,561 - Dshi_0455 0.58 -0.8 442,577 + Dshi_0455 0.60 +1.1 442,582 - Dshi_0455 0.60 -0.5 442,601 + Dshi_0455 0.62 +1.2 442,631 + Dshi_0455 0.66 +0.4 442,640 - Dshi_0455 0.67 -0.8 442,653 + Dshi_0455 0.68 -0.3 442,653 + Dshi_0455 0.68 -1.1 442,661 - Dshi_0455 0.69 -0.5 442,664 + Dshi_0455 0.69 +1.5 442,677 - Dshi_0455 0.71 -0.9 442,680 + Dshi_0455 0.71 -1.1 442,688 - Dshi_0455 0.72 -0.6 442,749 - Dshi_0455 0.78 -1.9 442,791 - Dshi_0455 0.83 +0.8 442,803 + Dshi_0455 0.84 +1.2 442,803 + Dshi_0455 0.84 -2.2 442,804 + Dshi_0455 0.84 -0.2 442,811 - Dshi_0455 0.85 -0.4 442,811 - Dshi_0455 0.85 -0.5 442,819 - Dshi_0455 0.86 -0.1 442,824 - Dshi_0455 0.87 +0.9 442,893 - +3.1 442,895 + +0.8 442,895 + -0.2 442,903 - +1.8 442,953 + -0.7 442,984 - +0.2 443,023 + +1.0 443,031 - +2.0 443,033 + -1.8 443,056 - -0.7 443,123 - +1.2 443,205 - Dshi_0456 0.17 -0.6 443,207 + Dshi_0456 0.18 -3.0 443,256 - Dshi_0456 0.23 -2.6 443,256 - Dshi_0456 0.23 -0.1 443,304 + Dshi_0456 0.28 -0.9 443,311 + Dshi_0456 0.28 -0.8 443,311 + Dshi_0456 0.28 -0.7 443,342 + Dshi_0456 0.32 +1.0 443,352 + Dshi_0456 0.33 -1.3 443,376 + Dshi_0456 0.35 +1.4 443,379 - Dshi_0456 0.36 -1.3 443,421 - Dshi_0456 0.40 -0.3 443,421 - Dshi_0456 0.40 +0.2 443,431 + Dshi_0456 0.41 -1.5 443,432 - Dshi_0456 0.41 -1.6 443,445 - Dshi_0456 0.42 -0.2 443,563 + Dshi_0456 0.55 -2.3 443,578 + Dshi_0456 0.56 -2.8 443,634 - Dshi_0456 0.62 -0.5 443,636 + Dshi_0456 0.62 -1.1 443,637 + Dshi_0456 0.62 +3.9 443,637 + Dshi_0456 0.62 -2.1 443,637 + Dshi_0456 0.62 +0.8 443,639 - Dshi_0456 0.63 -0.2 443,671 - Dshi_0456 0.66 +0.7 443,683 - Dshi_0456 0.67 +0.2 443,685 + Dshi_0456 0.68 -1.6 443,685 + Dshi_0456 0.68 -0.1 443,693 - Dshi_0456 0.68 -3.7 443,721 + Dshi_0456 0.71 -0.3 443,737 + Dshi_0456 0.73 -0.2 443,745 - Dshi_0456 0.74 -0.1 443,772 + Dshi_0456 0.77 +2.0 443,790 + Dshi_0456 0.78 -1.5 443,797 + Dshi_0456 0.79 -0.2 443,801 + Dshi_0456 0.80 -0.7 443,806 + Dshi_0456 0.80 +0.2 443,806 + Dshi_0456 0.80 +2.8 443,812 + Dshi_0456 0.81 +1.0 443,814 - Dshi_0456 0.81 -0.7 443,847 + Dshi_0456 0.84 -1.3 443,863 + Dshi_0456 0.86 +0.1 443,884 - Dshi_0456 0.88 +0.2 443,912 + -0.9 443,912 + +0.0 443,948 - +1.6 443,979 - +1.3 444,020 - -2.8 444,054 + +1.5 444,127 - Dshi_0457 0.15 +0.8 444,203 - Dshi_0457 0.23 -0.6 444,291 + Dshi_0457 0.33 +1.8 444,294 - Dshi_0457 0.33 +0.8 444,294 - Dshi_0457 0.33 -0.8 444,294 - Dshi_0457 0.33 +0.0 444,294 - Dshi_0457 0.33 -0.8 444,299 - Dshi_0457 0.34 +1.1 444,372 - Dshi_0457 0.42 -0.5 444,389 - Dshi_0457 0.44 +0.1 444,420 - Dshi_0457 0.47 +0.1 444,526 - Dshi_0457 0.59 -0.2 444,541 + Dshi_0457 0.60 -0.6 444,559 + Dshi_0457 0.62 -1.0 444,688 - Dshi_0457 0.77 +2.8 444,712 - Dshi_0457 0.79 -1.1 444,801 - Dshi_0457 0.89 -0.5 444,864 - -1.3 444,886 - +1.2 444,946 + Dshi_0458 0.13 -0.5 444,977 + Dshi_0458 0.22 -1.1 444,982 + Dshi_0458 0.23 -2.5 444,992 + Dshi_0458 0.26 -0.8
Or see this region's nucleotide sequence