Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0406 and Dshi_0407 are separated by 262 nucleotides Dshi_0407 and Dshi_0408 are separated by 10 nucleotides Dshi_0408 and Dshi_0409 are separated by 104 nucleotides
Dshi_0406: Dshi_0406 - hypothetical protein (RefSeq), at 400,543 to 401,841
_0406
Dshi_0407: Dshi_0407 - transcriptional regulator, XRE family (RefSeq), at 402,104 to 402,430
_0407
Dshi_0408: Dshi_0408 - protein of unknown function DUF955 (RefSeq), at 402,441 to 403,163
_0408
Dshi_0409: Dshi_0409 - hypothetical protein (RefSeq), at 403,268 to 403,912
_0409
Position (kb) 402
403 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 401.107 kb on + strand, within Dshi_0406 at 401.107 kb on + strand, within Dshi_0406 at 401.115 kb on - strand, within Dshi_0406 at 401.115 kb on - strand, within Dshi_0406 at 401.115 kb on - strand, within Dshi_0406 at 401.123 kb on - strand, within Dshi_0406 at 401.125 kb on + strand, within Dshi_0406 at 401.125 kb on + strand, within Dshi_0406 at 401.125 kb on + strand, within Dshi_0406 at 401.127 kb on + strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.208 kb on + strand, within Dshi_0406 at 401.222 kb on - strand, within Dshi_0406 at 401.241 kb on + strand, within Dshi_0406 at 401.241 kb on + strand, within Dshi_0406 at 401.256 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.275 kb on - strand, within Dshi_0406 at 401.280 kb on - strand, within Dshi_0406 at 401.280 kb on - strand, within Dshi_0406 at 401.280 kb on - strand, within Dshi_0406 at 401.356 kb on + strand, within Dshi_0406 at 401.374 kb on - strand, within Dshi_0406 at 401.380 kb on + strand, within Dshi_0406 at 401.392 kb on + strand, within Dshi_0406 at 401.402 kb on + strand, within Dshi_0406 at 401.402 kb on + strand, within Dshi_0406 at 401.408 kb on + strand, within Dshi_0406 at 401.410 kb on - strand, within Dshi_0406 at 401.411 kb on - strand, within Dshi_0406 at 401.414 kb on - strand, within Dshi_0406 at 401.474 kb on - strand, within Dshi_0406 at 401.477 kb on + strand, within Dshi_0406 at 401.477 kb on + strand, within Dshi_0406 at 401.485 kb on - strand, within Dshi_0406 at 401.495 kb on - strand, within Dshi_0406 at 401.520 kb on - strand, within Dshi_0406 at 401.545 kb on + strand, within Dshi_0406 at 401.577 kb on - strand, within Dshi_0406 at 401.586 kb on - strand, within Dshi_0406 at 401.657 kb on + strand, within Dshi_0406 at 401.662 kb on + strand, within Dshi_0406 at 401.662 kb on + strand, within Dshi_0406 at 401.662 kb on + strand, within Dshi_0406 at 401.670 kb on - strand, within Dshi_0406 at 401.717 kb on + strand at 401.778 kb on + strand at 401.806 kb on + strand at 401.877 kb on - strand at 401.959 kb on + strand at 401.991 kb on - strand at 402.013 kb on + strand at 402.115 kb on + strand at 402.131 kb on - strand at 402.231 kb on + strand, within Dshi_0407 at 402.289 kb on + strand, within Dshi_0407 at 402.311 kb on + strand, within Dshi_0407 at 402.321 kb on + strand, within Dshi_0407 at 402.346 kb on - strand, within Dshi_0407 at 402.566 kb on + strand, within Dshi_0408 at 402.583 kb on + strand, within Dshi_0408 at 402.621 kb on + strand, within Dshi_0408 at 402.630 kb on - strand, within Dshi_0408 at 402.678 kb on + strand, within Dshi_0408 at 402.836 kb on + strand, within Dshi_0408 at 402.869 kb on + strand, within Dshi_0408 at 402.884 kb on + strand, within Dshi_0408 at 402.927 kb on + strand, within Dshi_0408 at 402.927 kb on + strand, within Dshi_0408 at 402.987 kb on - strand, within Dshi_0408 at 402.996 kb on - strand, within Dshi_0408 at 402.996 kb on - strand, within Dshi_0408 at 403.020 kb on - strand, within Dshi_0408 at 403.267 kb on + strand at 403.376 kb on - strand, within Dshi_0409
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 401,107 + Dshi_0406 0.43 -0.3 401,107 + Dshi_0406 0.43 +1.9 401,115 - Dshi_0406 0.44 -1.4 401,115 - Dshi_0406 0.44 -0.4 401,115 - Dshi_0406 0.44 -0.6 401,123 - Dshi_0406 0.45 -1.8 401,125 + Dshi_0406 0.45 +0.1 401,125 + Dshi_0406 0.45 -1.2 401,125 + Dshi_0406 0.45 +0.6 401,127 + Dshi_0406 0.45 -2.0 401,133 - Dshi_0406 0.45 -1.8 401,133 - Dshi_0406 0.45 -1.5 401,133 - Dshi_0406 0.45 -0.6 401,133 - Dshi_0406 0.45 +0.2 401,133 - Dshi_0406 0.45 -0.1 401,133 - Dshi_0406 0.45 +0.9 401,133 - Dshi_0406 0.45 -2.1 401,133 - Dshi_0406 0.45 -0.7 401,133 - Dshi_0406 0.45 -3.8 401,208 + Dshi_0406 0.51 +1.1 401,222 - Dshi_0406 0.52 +1.8 401,241 + Dshi_0406 0.54 +3.7 401,241 + Dshi_0406 0.54 +0.9 401,256 + Dshi_0406 0.55 +0.5 401,272 + Dshi_0406 0.56 +1.3 401,272 + Dshi_0406 0.56 +0.1 401,272 + Dshi_0406 0.56 +0.0 401,272 + Dshi_0406 0.56 -1.2 401,272 + Dshi_0406 0.56 -1.1 401,272 + Dshi_0406 0.56 +1.7 401,272 + Dshi_0406 0.56 -2.8 401,275 - Dshi_0406 0.56 -1.0 401,280 - Dshi_0406 0.57 +3.2 401,280 - Dshi_0406 0.57 -2.4 401,280 - Dshi_0406 0.57 -0.3 401,356 + Dshi_0406 0.63 +1.9 401,374 - Dshi_0406 0.64 -0.8 401,380 + Dshi_0406 0.64 -2.3 401,392 + Dshi_0406 0.65 -0.3 401,402 + Dshi_0406 0.66 -1.3 401,402 + Dshi_0406 0.66 -1.5 401,408 + Dshi_0406 0.67 -0.4 401,410 - Dshi_0406 0.67 -0.4 401,411 - Dshi_0406 0.67 -0.1 401,414 - Dshi_0406 0.67 -0.8 401,474 - Dshi_0406 0.72 +1.0 401,477 + Dshi_0406 0.72 -1.0 401,477 + Dshi_0406 0.72 +1.7 401,485 - Dshi_0406 0.73 -0.1 401,495 - Dshi_0406 0.73 -0.5 401,520 - Dshi_0406 0.75 +0.0 401,545 + Dshi_0406 0.77 -0.2 401,577 - Dshi_0406 0.80 +0.1 401,586 - Dshi_0406 0.80 -0.4 401,657 + Dshi_0406 0.86 -3.0 401,662 + Dshi_0406 0.86 -1.0 401,662 + Dshi_0406 0.86 -0.7 401,662 + Dshi_0406 0.86 -1.3 401,670 - Dshi_0406 0.87 +0.6 401,717 + -1.6 401,778 + +0.3 401,806 + +0.7 401,877 - +1.4 401,959 + +0.3 401,991 - -4.6 402,013 + -0.2 402,115 + -0.2 402,131 - -1.8 402,231 + Dshi_0407 0.39 -0.2 402,289 + Dshi_0407 0.57 +1.5 402,311 + Dshi_0407 0.63 +0.1 402,321 + Dshi_0407 0.66 +0.7 402,346 - Dshi_0407 0.74 +0.5 402,566 + Dshi_0408 0.17 -0.7 402,583 + Dshi_0408 0.20 -1.4 402,621 + Dshi_0408 0.25 -1.8 402,630 - Dshi_0408 0.26 +2.5 402,678 + Dshi_0408 0.33 -0.6 402,836 + Dshi_0408 0.55 -0.6 402,869 + Dshi_0408 0.59 -1.4 402,884 + Dshi_0408 0.61 +0.3 402,927 + Dshi_0408 0.67 -0.9 402,927 + Dshi_0408 0.67 -0.0 402,987 - Dshi_0408 0.76 -1.1 402,996 - Dshi_0408 0.77 -1.1 402,996 - Dshi_0408 0.77 +0.1 403,020 - Dshi_0408 0.80 -0.8 403,267 + -1.0 403,376 - Dshi_0409 0.17 +3.7
Or see this region's nucleotide sequence