Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0396 and Dshi_0397 are separated by 96 nucleotides Dshi_0397 and Dshi_0398 overlap by 8 nucleotides
Dshi_0396: Dshi_0396 - Recombinase (RefSeq), at 386,137 to 387,813
_0396
Dshi_0397: Dshi_0397 - integrase family protein (RefSeq), at 387,910 to 388,986
_0397
Dshi_0398: Dshi_0398 - integrase family protein (RefSeq), at 388,979 to 390,658
_0398
Position (kb) 387
388
389 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 386.920 kb on - strand, within Dshi_0396 at 386.936 kb on - strand, within Dshi_0396 at 386.966 kb on - strand, within Dshi_0396 at 386.967 kb on + strand, within Dshi_0396 at 387.011 kb on - strand, within Dshi_0396 at 387.021 kb on - strand, within Dshi_0396 at 387.084 kb on - strand, within Dshi_0396 at 387.155 kb on - strand, within Dshi_0396 at 387.182 kb on - strand, within Dshi_0396 at 387.203 kb on - strand, within Dshi_0396 at 387.203 kb on - strand, within Dshi_0396 at 387.250 kb on - strand, within Dshi_0396 at 387.250 kb on - strand, within Dshi_0396 at 387.250 kb on - strand, within Dshi_0396 at 387.250 kb on - strand, within Dshi_0396 at 387.260 kb on - strand, within Dshi_0396 at 387.274 kb on + strand, within Dshi_0396 at 387.315 kb on + strand, within Dshi_0396 at 387.323 kb on - strand, within Dshi_0396 at 387.373 kb on + strand, within Dshi_0396 at 387.375 kb on - strand, within Dshi_0396 at 387.493 kb on - strand, within Dshi_0396 at 387.520 kb on + strand, within Dshi_0396 at 387.520 kb on - strand, within Dshi_0396 at 387.528 kb on + strand, within Dshi_0396 at 387.531 kb on - strand, within Dshi_0396 at 387.552 kb on - strand, within Dshi_0396 at 387.606 kb on + strand, within Dshi_0396 at 387.612 kb on - strand, within Dshi_0396 at 387.666 kb on + strand at 387.666 kb on + strand at 387.666 kb on + strand at 387.674 kb on - strand at 387.675 kb on - strand at 387.706 kb on + strand at 387.708 kb on - strand at 387.714 kb on - strand at 387.784 kb on - strand at 387.806 kb on - strand at 387.806 kb on - strand at 387.812 kb on + strand at 387.820 kb on - strand at 387.825 kb on - strand at 387.826 kb on - strand at 387.829 kb on + strand at 387.830 kb on + strand at 387.831 kb on - strand at 387.842 kb on - strand at 387.885 kb on + strand at 387.893 kb on + strand at 387.917 kb on - strand at 387.946 kb on - strand at 387.986 kb on - strand at 387.989 kb on + strand at 387.989 kb on + strand at 387.996 kb on + strand at 387.996 kb on - strand at 388.007 kb on - strand at 388.009 kb on + strand at 388.017 kb on - strand at 388.030 kb on + strand, within Dshi_0397 at 388.030 kb on + strand, within Dshi_0397 at 388.086 kb on + strand, within Dshi_0397 at 388.134 kb on + strand, within Dshi_0397 at 388.134 kb on - strand, within Dshi_0397 at 388.142 kb on - strand, within Dshi_0397 at 388.149 kb on + strand, within Dshi_0397 at 388.199 kb on - strand, within Dshi_0397 at 388.241 kb on - strand, within Dshi_0397 at 388.258 kb on - strand, within Dshi_0397 at 388.299 kb on + strand, within Dshi_0397 at 388.328 kb on - strand, within Dshi_0397 at 388.367 kb on - strand, within Dshi_0397 at 388.403 kb on + strand, within Dshi_0397 at 388.405 kb on + strand, within Dshi_0397 at 388.413 kb on - strand, within Dshi_0397 at 388.451 kb on + strand, within Dshi_0397 at 388.519 kb on + strand, within Dshi_0397 at 388.564 kb on + strand, within Dshi_0397 at 388.630 kb on - strand, within Dshi_0397 at 388.634 kb on + strand, within Dshi_0397 at 388.643 kb on + strand, within Dshi_0397 at 388.670 kb on + strand, within Dshi_0397 at 388.713 kb on - strand, within Dshi_0397 at 388.719 kb on + strand, within Dshi_0397 at 388.788 kb on + strand, within Dshi_0397 at 388.788 kb on + strand, within Dshi_0397 at 388.788 kb on + strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.808 kb on + strand, within Dshi_0397 at 388.824 kb on + strand, within Dshi_0397 at 388.824 kb on + strand, within Dshi_0397 at 388.824 kb on + strand, within Dshi_0397 at 388.824 kb on + strand, within Dshi_0397 at 388.832 kb on - strand, within Dshi_0397 at 388.857 kb on + strand, within Dshi_0397 at 388.857 kb on + strand, within Dshi_0397 at 388.865 kb on - strand, within Dshi_0397 at 388.878 kb on + strand, within Dshi_0397 at 388.886 kb on - strand at 388.886 kb on - strand at 388.886 kb on - strand at 388.886 kb on - strand at 388.937 kb on + strand at 388.938 kb on + strand at 388.945 kb on - strand at 388.947 kb on + strand at 388.979 kb on - strand at 389.016 kb on + strand at 389.026 kb on - strand at 389.037 kb on + strand at 389.038 kb on - strand at 389.085 kb on + strand at 389.140 kb on + strand at 389.152 kb on - strand, within Dshi_0398 at 389.170 kb on + strand, within Dshi_0398 at 389.178 kb on - strand, within Dshi_0398 at 389.178 kb on - strand, within Dshi_0398 at 389.178 kb on - strand, within Dshi_0398 at 389.178 kb on - strand, within Dshi_0398 at 389.335 kb on + strand, within Dshi_0398 at 389.335 kb on + strand, within Dshi_0398 at 389.335 kb on - strand, within Dshi_0398 at 389.343 kb on - strand, within Dshi_0398 at 389.353 kb on - strand, within Dshi_0398 at 389.370 kb on + strand, within Dshi_0398 at 389.378 kb on + strand, within Dshi_0398 at 389.378 kb on + strand, within Dshi_0398 at 389.378 kb on - strand, within Dshi_0398 at 389.386 kb on + strand, within Dshi_0398 at 389.410 kb on + strand, within Dshi_0398 at 389.416 kb on + strand, within Dshi_0398 at 389.453 kb on + strand, within Dshi_0398 at 389.453 kb on + strand, within Dshi_0398 at 389.458 kb on + strand, within Dshi_0398 at 389.546 kb on + strand, within Dshi_0398 at 389.549 kb on + strand, within Dshi_0398 at 389.549 kb on + strand, within Dshi_0398 at 389.569 kb on - strand, within Dshi_0398 at 389.575 kb on + strand, within Dshi_0398 at 389.605 kb on + strand, within Dshi_0398 at 389.613 kb on - strand, within Dshi_0398 at 389.613 kb on - strand, within Dshi_0398 at 389.622 kb on + strand, within Dshi_0398 at 389.622 kb on + strand, within Dshi_0398 at 389.622 kb on + strand, within Dshi_0398 at 389.630 kb on - strand, within Dshi_0398 at 389.632 kb on + strand, within Dshi_0398 at 389.650 kb on + strand, within Dshi_0398 at 389.668 kb on - strand, within Dshi_0398 at 389.698 kb on + strand, within Dshi_0398 at 389.706 kb on + strand, within Dshi_0398 at 389.706 kb on + strand, within Dshi_0398 at 389.714 kb on - strand, within Dshi_0398 at 389.714 kb on - strand, within Dshi_0398 at 389.725 kb on - strand, within Dshi_0398 at 389.782 kb on - strand, within Dshi_0398 at 389.787 kb on - strand, within Dshi_0398 at 389.812 kb on + strand, within Dshi_0398 at 389.813 kb on - strand, within Dshi_0398 at 389.869 kb on + strand, within Dshi_0398 at 389.869 kb on + strand, within Dshi_0398 at 389.878 kb on - strand, within Dshi_0398 at 389.884 kb on + strand, within Dshi_0398 at 389.900 kb on + strand, within Dshi_0398 at 389.939 kb on - strand, within Dshi_0398 at 389.947 kb on + strand, within Dshi_0398 at 389.957 kb on + strand, within Dshi_0398 at 389.964 kb on + strand, within Dshi_0398 at 389.972 kb on - strand, within Dshi_0398 at 389.972 kb on - strand, within Dshi_0398 at 389.975 kb on + strand, within Dshi_0398 at 389.985 kb on - strand, within Dshi_0398 at 389.985 kb on - strand, within Dshi_0398
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 386,920 - Dshi_0396 0.47 -0.3 386,936 - Dshi_0396 0.48 -1.2 386,966 - Dshi_0396 0.49 -1.1 386,967 + Dshi_0396 0.49 -1.4 387,011 - Dshi_0396 0.52 -0.6 387,021 - Dshi_0396 0.53 +0.4 387,084 - Dshi_0396 0.56 +3.2 387,155 - Dshi_0396 0.61 +0.4 387,182 - Dshi_0396 0.62 -0.3 387,203 - Dshi_0396 0.64 +0.6 387,203 - Dshi_0396 0.64 -0.3 387,250 - Dshi_0396 0.66 -0.0 387,250 - Dshi_0396 0.66 +0.1 387,250 - Dshi_0396 0.66 -1.2 387,250 - Dshi_0396 0.66 +0.6 387,260 - Dshi_0396 0.67 -0.9 387,274 + Dshi_0396 0.68 +1.4 387,315 + Dshi_0396 0.70 +0.5 387,323 - Dshi_0396 0.71 -2.1 387,373 + Dshi_0396 0.74 -0.6 387,375 - Dshi_0396 0.74 -0.3 387,493 - Dshi_0396 0.81 +0.7 387,520 + Dshi_0396 0.82 +1.9 387,520 - Dshi_0396 0.82 +1.2 387,528 + Dshi_0396 0.83 -0.1 387,531 - Dshi_0396 0.83 -0.3 387,552 - Dshi_0396 0.84 +1.6 387,606 + Dshi_0396 0.88 +1.0 387,612 - Dshi_0396 0.88 -0.5 387,666 + -0.6 387,666 + -0.2 387,666 + +0.6 387,674 - -1.1 387,675 - +0.2 387,706 + +2.7 387,708 - +0.4 387,714 - +1.1 387,784 - +0.1 387,806 - -0.4 387,806 - +0.7 387,812 + -0.4 387,820 - -0.7 387,825 - +0.3 387,826 - -0.1 387,829 + -0.2 387,830 + -1.6 387,831 - -0.4 387,842 - +1.0 387,885 + +0.7 387,893 + -0.6 387,917 - +0.0 387,946 - +0.9 387,986 - -2.9 387,989 + -2.1 387,989 + -0.4 387,996 + +0.2 387,996 - +1.0 388,007 - +0.1 388,009 + -1.8 388,017 - -0.2 388,030 + Dshi_0397 0.11 -0.0 388,030 + Dshi_0397 0.11 -2.4 388,086 + Dshi_0397 0.16 -0.0 388,134 + Dshi_0397 0.21 +0.1 388,134 - Dshi_0397 0.21 -0.9 388,142 - Dshi_0397 0.22 +0.4 388,149 + Dshi_0397 0.22 -2.1 388,199 - Dshi_0397 0.27 +0.5 388,241 - Dshi_0397 0.31 -0.4 388,258 - Dshi_0397 0.32 -1.9 388,299 + Dshi_0397 0.36 -0.1 388,328 - Dshi_0397 0.39 -0.2 388,367 - Dshi_0397 0.42 -0.7 388,403 + Dshi_0397 0.46 -1.6 388,405 + Dshi_0397 0.46 -0.9 388,413 - Dshi_0397 0.47 -1.0 388,451 + Dshi_0397 0.50 -0.6 388,519 + Dshi_0397 0.57 -1.7 388,564 + Dshi_0397 0.61 -1.1 388,630 - Dshi_0397 0.67 -0.5 388,634 + Dshi_0397 0.67 +2.0 388,643 + Dshi_0397 0.68 +2.2 388,670 + Dshi_0397 0.71 +0.3 388,713 - Dshi_0397 0.75 +0.4 388,719 + Dshi_0397 0.75 +0.4 388,788 + Dshi_0397 0.82 -0.7 388,788 + Dshi_0397 0.82 +1.6 388,788 + Dshi_0397 0.82 -1.5 388,796 - Dshi_0397 0.82 +1.1 388,796 - Dshi_0397 0.82 -0.8 388,796 - Dshi_0397 0.82 +0.0 388,796 - Dshi_0397 0.82 +0.3 388,796 - Dshi_0397 0.82 +0.4 388,796 - Dshi_0397 0.82 -1.5 388,808 + Dshi_0397 0.83 -0.2 388,824 + Dshi_0397 0.85 -0.6 388,824 + Dshi_0397 0.85 +0.3 388,824 + Dshi_0397 0.85 -0.1 388,824 + Dshi_0397 0.85 -1.4 388,832 - Dshi_0397 0.86 -0.7 388,857 + Dshi_0397 0.88 -2.4 388,857 + Dshi_0397 0.88 +1.2 388,865 - Dshi_0397 0.89 -0.8 388,878 + Dshi_0397 0.90 -0.1 388,886 - -0.9 388,886 - -1.6 388,886 - +0.2 388,886 - -1.6 388,937 + +0.3 388,938 + -3.6 388,945 - +0.4 388,947 + +2.3 388,979 - -0.8 389,016 + -0.0 389,026 - +0.5 389,037 + +0.2 389,038 - +2.2 389,085 + +2.1 389,140 + +1.2 389,152 - Dshi_0398 0.10 -0.2 389,170 + Dshi_0398 0.11 -0.1 389,178 - Dshi_0398 0.12 -1.3 389,178 - Dshi_0398 0.12 +0.1 389,178 - Dshi_0398 0.12 -0.9 389,178 - Dshi_0398 0.12 -0.1 389,335 + Dshi_0398 0.21 -2.6 389,335 + Dshi_0398 0.21 +1.8 389,335 - Dshi_0398 0.21 +1.6 389,343 - Dshi_0398 0.22 +0.4 389,353 - Dshi_0398 0.22 +3.2 389,370 + Dshi_0398 0.23 -0.8 389,378 + Dshi_0398 0.24 -0.5 389,378 + Dshi_0398 0.24 +0.1 389,378 - Dshi_0398 0.24 +0.4 389,386 + Dshi_0398 0.24 +0.6 389,410 + Dshi_0398 0.26 +0.8 389,416 + Dshi_0398 0.26 +0.4 389,453 + Dshi_0398 0.28 -0.0 389,453 + Dshi_0398 0.28 +0.2 389,458 + Dshi_0398 0.29 +0.4 389,546 + Dshi_0398 0.34 -0.1 389,549 + Dshi_0398 0.34 -0.2 389,549 + Dshi_0398 0.34 -0.9 389,569 - Dshi_0398 0.35 -3.1 389,575 + Dshi_0398 0.35 -0.6 389,605 + Dshi_0398 0.37 -1.3 389,613 - Dshi_0398 0.38 -0.4 389,613 - Dshi_0398 0.38 -0.6 389,622 + Dshi_0398 0.38 -0.8 389,622 + Dshi_0398 0.38 -0.0 389,622 + Dshi_0398 0.38 -2.4 389,630 - Dshi_0398 0.39 -0.5 389,632 + Dshi_0398 0.39 +1.2 389,650 + Dshi_0398 0.40 +1.0 389,668 - Dshi_0398 0.41 -2.9 389,698 + Dshi_0398 0.43 -0.2 389,706 + Dshi_0398 0.43 +1.9 389,706 + Dshi_0398 0.43 +1.8 389,714 - Dshi_0398 0.44 +0.9 389,714 - Dshi_0398 0.44 -0.5 389,725 - Dshi_0398 0.44 -1.9 389,782 - Dshi_0398 0.48 -1.4 389,787 - Dshi_0398 0.48 -0.5 389,812 + Dshi_0398 0.50 -0.4 389,813 - Dshi_0398 0.50 -0.3 389,869 + Dshi_0398 0.53 +0.5 389,869 + Dshi_0398 0.53 +1.1 389,878 - Dshi_0398 0.54 -1.7 389,884 + Dshi_0398 0.54 -1.6 389,900 + Dshi_0398 0.55 -0.2 389,939 - Dshi_0398 0.57 -1.0 389,947 + Dshi_0398 0.58 +0.2 389,957 + Dshi_0398 0.58 -0.7 389,964 + Dshi_0398 0.59 +0.2 389,972 - Dshi_0398 0.59 -1.1 389,972 - Dshi_0398 0.59 -0.3 389,975 + Dshi_0398 0.59 +0.4 389,985 - Dshi_0398 0.60 -0.3 389,985 - Dshi_0398 0.60 -1.3
Or see this region's nucleotide sequence