Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0395 and Dshi_0396 are separated by 178 nucleotides Dshi_0396 and Dshi_0397 are separated by 96 nucleotides
Dshi_0395: Dshi_0395 - integrase family protein (RefSeq), at 384,765 to 385,958
_0395
Dshi_0396: Dshi_0396 - Recombinase (RefSeq), at 386,137 to 387,813
_0396
Dshi_0397: Dshi_0397 - integrase family protein (RefSeq), at 387,910 to 388,986
_0397
Position (kb) 386
387
388 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 385.138 kb on + strand, within Dshi_0395 at 385.143 kb on + strand, within Dshi_0395 at 385.184 kb on + strand, within Dshi_0395 at 385.199 kb on + strand, within Dshi_0395 at 385.199 kb on + strand, within Dshi_0395 at 385.199 kb on + strand, within Dshi_0395 at 385.199 kb on + strand, within Dshi_0395 at 385.199 kb on + strand, within Dshi_0395 at 385.199 kb on + strand, within Dshi_0395 at 385.199 kb on + strand, within Dshi_0395 at 385.199 kb on + strand, within Dshi_0395 at 385.204 kb on + strand, within Dshi_0395 at 385.204 kb on + strand, within Dshi_0395 at 385.207 kb on - strand, within Dshi_0395 at 385.207 kb on - strand, within Dshi_0395 at 385.207 kb on - strand, within Dshi_0395 at 385.207 kb on - strand, within Dshi_0395 at 385.279 kb on + strand, within Dshi_0395 at 385.279 kb on + strand, within Dshi_0395 at 385.280 kb on + strand, within Dshi_0395 at 385.280 kb on + strand, within Dshi_0395 at 385.307 kb on - strand, within Dshi_0395 at 385.319 kb on - strand, within Dshi_0395 at 385.357 kb on - strand, within Dshi_0395 at 385.402 kb on + strand, within Dshi_0395 at 385.403 kb on + strand, within Dshi_0395 at 385.403 kb on + strand, within Dshi_0395 at 385.410 kb on - strand, within Dshi_0395 at 385.418 kb on + strand, within Dshi_0395 at 385.449 kb on - strand, within Dshi_0395 at 385.492 kb on - strand, within Dshi_0395 at 385.492 kb on - strand, within Dshi_0395 at 385.517 kb on - strand, within Dshi_0395 at 385.555 kb on + strand, within Dshi_0395 at 385.557 kb on + strand, within Dshi_0395 at 385.565 kb on - strand, within Dshi_0395 at 385.609 kb on + strand, within Dshi_0395 at 385.609 kb on + strand, within Dshi_0395 at 385.609 kb on + strand, within Dshi_0395 at 385.617 kb on - strand, within Dshi_0395 at 385.617 kb on - strand, within Dshi_0395 at 385.617 kb on - strand, within Dshi_0395 at 385.617 kb on - strand, within Dshi_0395 at 385.623 kb on - strand, within Dshi_0395 at 385.628 kb on + strand, within Dshi_0395 at 385.730 kb on - strand, within Dshi_0395 at 385.777 kb on + strand, within Dshi_0395 at 385.777 kb on + strand, within Dshi_0395 at 385.777 kb on + strand, within Dshi_0395 at 385.876 kb on + strand at 385.876 kb on - strand at 385.877 kb on + strand at 385.883 kb on - strand at 385.919 kb on - strand at 385.966 kb on + strand at 385.974 kb on - strand at 385.976 kb on + strand at 385.984 kb on - strand at 386.086 kb on + strand at 386.091 kb on + strand at 386.091 kb on + strand at 386.091 kb on + strand at 386.099 kb on - strand at 386.099 kb on - strand at 386.101 kb on + strand at 386.101 kb on + strand at 386.101 kb on + strand at 386.101 kb on + strand at 386.101 kb on + strand at 386.109 kb on - strand at 386.207 kb on - strand at 386.265 kb on + strand at 386.265 kb on + strand at 386.265 kb on + strand at 386.273 kb on - strand at 386.273 kb on - strand at 386.340 kb on + strand, within Dshi_0396 at 386.378 kb on + strand, within Dshi_0396 at 386.378 kb on + strand, within Dshi_0396 at 386.378 kb on + strand, within Dshi_0396 at 386.385 kb on - strand, within Dshi_0396 at 386.386 kb on - strand, within Dshi_0396 at 386.427 kb on - strand, within Dshi_0396 at 386.434 kb on + strand, within Dshi_0396 at 386.442 kb on - strand, within Dshi_0396 at 386.442 kb on - strand, within Dshi_0396 at 386.442 kb on - strand, within Dshi_0396 at 386.503 kb on - strand, within Dshi_0396 at 386.503 kb on - strand, within Dshi_0396 at 386.529 kb on + strand, within Dshi_0396 at 386.532 kb on - strand, within Dshi_0396 at 386.642 kb on - strand, within Dshi_0396 at 386.688 kb on + strand, within Dshi_0396 at 386.688 kb on + strand, within Dshi_0396 at 386.696 kb on - strand, within Dshi_0396 at 386.711 kb on - strand, within Dshi_0396 at 386.721 kb on + strand, within Dshi_0396 at 386.727 kb on - strand, within Dshi_0396 at 386.756 kb on + strand, within Dshi_0396 at 386.777 kb on - strand, within Dshi_0396 at 386.802 kb on + strand, within Dshi_0396 at 386.802 kb on + strand, within Dshi_0396 at 386.805 kb on - strand, within Dshi_0396 at 386.810 kb on - strand, within Dshi_0396 at 386.821 kb on - strand, within Dshi_0396 at 386.835 kb on - strand, within Dshi_0396 at 386.836 kb on - strand, within Dshi_0396 at 386.920 kb on - strand, within Dshi_0396 at 386.936 kb on - strand, within Dshi_0396 at 386.966 kb on - strand, within Dshi_0396 at 386.967 kb on + strand, within Dshi_0396 at 387.011 kb on - strand, within Dshi_0396 at 387.021 kb on - strand, within Dshi_0396 at 387.084 kb on - strand, within Dshi_0396 at 387.155 kb on - strand, within Dshi_0396 at 387.182 kb on - strand, within Dshi_0396 at 387.203 kb on - strand, within Dshi_0396 at 387.203 kb on - strand, within Dshi_0396 at 387.250 kb on - strand, within Dshi_0396 at 387.250 kb on - strand, within Dshi_0396 at 387.250 kb on - strand, within Dshi_0396 at 387.250 kb on - strand, within Dshi_0396 at 387.260 kb on - strand, within Dshi_0396 at 387.274 kb on + strand, within Dshi_0396 at 387.315 kb on + strand, within Dshi_0396 at 387.323 kb on - strand, within Dshi_0396 at 387.373 kb on + strand, within Dshi_0396 at 387.375 kb on - strand, within Dshi_0396 at 387.493 kb on - strand, within Dshi_0396 at 387.520 kb on + strand, within Dshi_0396 at 387.520 kb on - strand, within Dshi_0396 at 387.528 kb on + strand, within Dshi_0396 at 387.531 kb on - strand, within Dshi_0396 at 387.552 kb on - strand, within Dshi_0396 at 387.606 kb on + strand, within Dshi_0396 at 387.612 kb on - strand, within Dshi_0396 at 387.666 kb on + strand at 387.666 kb on + strand at 387.666 kb on + strand at 387.674 kb on - strand at 387.675 kb on - strand at 387.706 kb on + strand at 387.708 kb on - strand at 387.714 kb on - strand at 387.784 kb on - strand at 387.806 kb on - strand at 387.806 kb on - strand at 387.812 kb on + strand at 387.820 kb on - strand at 387.825 kb on - strand at 387.826 kb on - strand at 387.829 kb on + strand at 387.830 kb on + strand at 387.831 kb on - strand at 387.842 kb on - strand at 387.885 kb on + strand at 387.893 kb on + strand at 387.917 kb on - strand at 387.946 kb on - strand at 387.986 kb on - strand at 387.989 kb on + strand at 387.989 kb on + strand at 387.996 kb on + strand at 387.996 kb on - strand at 388.007 kb on - strand at 388.009 kb on + strand at 388.017 kb on - strand at 388.030 kb on + strand, within Dshi_0397 at 388.030 kb on + strand, within Dshi_0397 at 388.086 kb on + strand, within Dshi_0397 at 388.134 kb on + strand, within Dshi_0397 at 388.134 kb on - strand, within Dshi_0397 at 388.142 kb on - strand, within Dshi_0397 at 388.149 kb on + strand, within Dshi_0397 at 388.199 kb on - strand, within Dshi_0397 at 388.241 kb on - strand, within Dshi_0397 at 388.258 kb on - strand, within Dshi_0397 at 388.299 kb on + strand, within Dshi_0397 at 388.328 kb on - strand, within Dshi_0397 at 388.367 kb on - strand, within Dshi_0397 at 388.403 kb on + strand, within Dshi_0397 at 388.405 kb on + strand, within Dshi_0397 at 388.413 kb on - strand, within Dshi_0397 at 388.451 kb on + strand, within Dshi_0397 at 388.519 kb on + strand, within Dshi_0397 at 388.564 kb on + strand, within Dshi_0397 at 388.630 kb on - strand, within Dshi_0397 at 388.634 kb on + strand, within Dshi_0397 at 388.643 kb on + strand, within Dshi_0397 at 388.670 kb on + strand, within Dshi_0397 at 388.713 kb on - strand, within Dshi_0397 at 388.719 kb on + strand, within Dshi_0397 at 388.788 kb on + strand, within Dshi_0397 at 388.788 kb on + strand, within Dshi_0397 at 388.788 kb on + strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.808 kb on + strand, within Dshi_0397
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 385,138 + Dshi_0395 0.31 -0.3 385,143 + Dshi_0395 0.32 -1.1 385,184 + Dshi_0395 0.35 -0.3 385,199 + Dshi_0395 0.36 +2.7 385,199 + Dshi_0395 0.36 +0.5 385,199 + Dshi_0395 0.36 +3.6 385,199 + Dshi_0395 0.36 -0.2 385,199 + Dshi_0395 0.36 +1.5 385,199 + Dshi_0395 0.36 +1.7 385,199 + Dshi_0395 0.36 +0.8 385,199 + Dshi_0395 0.36 -0.2 385,204 + Dshi_0395 0.37 +1.4 385,204 + Dshi_0395 0.37 -0.4 385,207 - Dshi_0395 0.37 +0.2 385,207 - Dshi_0395 0.37 -0.2 385,207 - Dshi_0395 0.37 -0.6 385,207 - Dshi_0395 0.37 -1.2 385,279 + Dshi_0395 0.43 -1.1 385,279 + Dshi_0395 0.43 +0.8 385,280 + Dshi_0395 0.43 +0.5 385,280 + Dshi_0395 0.43 +0.0 385,307 - Dshi_0395 0.45 -0.7 385,319 - Dshi_0395 0.46 -0.2 385,357 - Dshi_0395 0.50 -0.4 385,402 + Dshi_0395 0.53 +1.4 385,403 + Dshi_0395 0.53 +0.1 385,403 + Dshi_0395 0.53 +1.0 385,410 - Dshi_0395 0.54 +0.1 385,418 + Dshi_0395 0.55 -1.9 385,449 - Dshi_0395 0.57 -0.2 385,492 - Dshi_0395 0.61 -0.2 385,492 - Dshi_0395 0.61 +2.4 385,517 - Dshi_0395 0.63 -0.6 385,555 + Dshi_0395 0.66 -2.3 385,557 + Dshi_0395 0.66 +0.6 385,565 - Dshi_0395 0.67 +0.6 385,609 + Dshi_0395 0.71 +0.8 385,609 + Dshi_0395 0.71 +0.8 385,609 + Dshi_0395 0.71 -1.0 385,617 - Dshi_0395 0.71 +0.8 385,617 - Dshi_0395 0.71 +0.6 385,617 - Dshi_0395 0.71 +0.8 385,617 - Dshi_0395 0.71 +0.3 385,623 - Dshi_0395 0.72 +0.1 385,628 + Dshi_0395 0.72 -0.6 385,730 - Dshi_0395 0.81 -0.0 385,777 + Dshi_0395 0.85 -1.3 385,777 + Dshi_0395 0.85 -1.6 385,777 + Dshi_0395 0.85 -0.5 385,876 + +1.4 385,876 - -2.8 385,877 + -1.8 385,883 - -0.9 385,919 - -0.5 385,966 + +0.2 385,974 - +2.8 385,976 + -1.3 385,984 - +0.8 386,086 + +1.3 386,091 + -0.4 386,091 + -0.1 386,091 + -0.9 386,099 - -2.1 386,099 - +1.5 386,101 + -0.8 386,101 + +4.1 386,101 + -2.3 386,101 + -0.9 386,101 + -1.1 386,109 - -0.3 386,207 - +3.8 386,265 + +1.2 386,265 + +0.6 386,265 + -0.2 386,273 - +4.0 386,273 - +3.0 386,340 + Dshi_0396 0.12 -0.1 386,378 + Dshi_0396 0.14 +1.1 386,378 + Dshi_0396 0.14 +1.8 386,378 + Dshi_0396 0.14 -0.5 386,385 - Dshi_0396 0.15 -0.2 386,386 - Dshi_0396 0.15 -1.3 386,427 - Dshi_0396 0.17 +0.1 386,434 + Dshi_0396 0.18 -0.6 386,442 - Dshi_0396 0.18 +0.1 386,442 - Dshi_0396 0.18 +2.0 386,442 - Dshi_0396 0.18 -0.0 386,503 - Dshi_0396 0.22 +0.1 386,503 - Dshi_0396 0.22 +0.2 386,529 + Dshi_0396 0.23 -1.5 386,532 - Dshi_0396 0.24 +0.0 386,642 - Dshi_0396 0.30 -0.8 386,688 + Dshi_0396 0.33 -0.0 386,688 + Dshi_0396 0.33 -0.0 386,696 - Dshi_0396 0.33 -0.9 386,711 - Dshi_0396 0.34 +0.5 386,721 + Dshi_0396 0.35 +3.0 386,727 - Dshi_0396 0.35 +0.7 386,756 + Dshi_0396 0.37 +0.3 386,777 - Dshi_0396 0.38 -0.6 386,802 + Dshi_0396 0.40 -1.0 386,802 + Dshi_0396 0.40 -3.9 386,805 - Dshi_0396 0.40 +0.4 386,810 - Dshi_0396 0.40 +0.1 386,821 - Dshi_0396 0.41 +0.7 386,835 - Dshi_0396 0.42 -2.4 386,836 - Dshi_0396 0.42 -0.2 386,920 - Dshi_0396 0.47 -0.3 386,936 - Dshi_0396 0.48 -1.2 386,966 - Dshi_0396 0.49 -1.1 386,967 + Dshi_0396 0.49 -1.4 387,011 - Dshi_0396 0.52 -0.6 387,021 - Dshi_0396 0.53 +0.4 387,084 - Dshi_0396 0.56 +3.2 387,155 - Dshi_0396 0.61 +0.4 387,182 - Dshi_0396 0.62 -0.3 387,203 - Dshi_0396 0.64 +0.6 387,203 - Dshi_0396 0.64 -0.3 387,250 - Dshi_0396 0.66 -0.0 387,250 - Dshi_0396 0.66 +0.1 387,250 - Dshi_0396 0.66 -1.2 387,250 - Dshi_0396 0.66 +0.6 387,260 - Dshi_0396 0.67 -0.9 387,274 + Dshi_0396 0.68 +1.4 387,315 + Dshi_0396 0.70 +0.5 387,323 - Dshi_0396 0.71 -2.1 387,373 + Dshi_0396 0.74 -0.6 387,375 - Dshi_0396 0.74 -0.3 387,493 - Dshi_0396 0.81 +0.7 387,520 + Dshi_0396 0.82 +1.9 387,520 - Dshi_0396 0.82 +1.2 387,528 + Dshi_0396 0.83 -0.1 387,531 - Dshi_0396 0.83 -0.3 387,552 - Dshi_0396 0.84 +1.6 387,606 + Dshi_0396 0.88 +1.0 387,612 - Dshi_0396 0.88 -0.5 387,666 + -0.6 387,666 + -0.2 387,666 + +0.6 387,674 - -1.1 387,675 - +0.2 387,706 + +2.7 387,708 - +0.4 387,714 - +1.1 387,784 - +0.1 387,806 - -0.4 387,806 - +0.7 387,812 + -0.4 387,820 - -0.7 387,825 - +0.3 387,826 - -0.1 387,829 + -0.2 387,830 + -1.6 387,831 - -0.4 387,842 - +1.0 387,885 + +0.7 387,893 + -0.6 387,917 - +0.0 387,946 - +0.9 387,986 - -2.9 387,989 + -2.1 387,989 + -0.4 387,996 + +0.2 387,996 - +1.0 388,007 - +0.1 388,009 + -1.8 388,017 - -0.2 388,030 + Dshi_0397 0.11 -0.0 388,030 + Dshi_0397 0.11 -2.4 388,086 + Dshi_0397 0.16 -0.0 388,134 + Dshi_0397 0.21 +0.1 388,134 - Dshi_0397 0.21 -0.9 388,142 - Dshi_0397 0.22 +0.4 388,149 + Dshi_0397 0.22 -2.1 388,199 - Dshi_0397 0.27 +0.5 388,241 - Dshi_0397 0.31 -0.4 388,258 - Dshi_0397 0.32 -1.9 388,299 + Dshi_0397 0.36 -0.1 388,328 - Dshi_0397 0.39 -0.2 388,367 - Dshi_0397 0.42 -0.7 388,403 + Dshi_0397 0.46 -1.6 388,405 + Dshi_0397 0.46 -0.9 388,413 - Dshi_0397 0.47 -1.0 388,451 + Dshi_0397 0.50 -0.6 388,519 + Dshi_0397 0.57 -1.7 388,564 + Dshi_0397 0.61 -1.1 388,630 - Dshi_0397 0.67 -0.5 388,634 + Dshi_0397 0.67 +2.0 388,643 + Dshi_0397 0.68 +2.2 388,670 + Dshi_0397 0.71 +0.3 388,713 - Dshi_0397 0.75 +0.4 388,719 + Dshi_0397 0.75 +0.4 388,788 + Dshi_0397 0.82 -0.7 388,788 + Dshi_0397 0.82 +1.6 388,788 + Dshi_0397 0.82 -1.5 388,796 - Dshi_0397 0.82 +1.1 388,796 - Dshi_0397 0.82 -0.8 388,796 - Dshi_0397 0.82 +0.0 388,796 - Dshi_0397 0.82 +0.3 388,796 - Dshi_0397 0.82 +0.4 388,796 - Dshi_0397 0.82 -1.5 388,808 + Dshi_0397 0.83 -0.2
Or see this region's nucleotide sequence