Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0380 and Dshi_0381 are separated by 62 nucleotides Dshi_0381 and Dshi_0382 are separated by 156 nucleotides
Dshi_0380: Dshi_0380 - hypothetical protein (RefSeq), at 362,188 to 363,468
_0380
Dshi_0381: Dshi_0381 - ABC transporter related (RefSeq), at 363,531 to 364,355
_0381
Dshi_0382: Dshi_0382 - phenylacetate-CoA ligase, putative (RefSeq), at 364,512 to 365,732
_0382
Position (kb) 363
364
365 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 362.578 kb on + strand, within Dshi_0380 at 362.586 kb on - strand, within Dshi_0380 at 362.590 kb on + strand, within Dshi_0380 at 362.620 kb on - strand, within Dshi_0380 at 362.651 kb on - strand, within Dshi_0380 at 362.670 kb on + strand, within Dshi_0380 at 362.879 kb on - strand, within Dshi_0380 at 362.986 kb on + strand, within Dshi_0380 at 363.093 kb on + strand, within Dshi_0380 at 363.096 kb on - strand, within Dshi_0380 at 363.288 kb on - strand, within Dshi_0380 at 363.306 kb on - strand, within Dshi_0380 at 363.346 kb on + strand at 363.346 kb on + strand at 363.346 kb on + strand at 363.436 kb on + strand at 363.541 kb on - strand at 363.609 kb on + strand at 363.611 kb on + strand at 363.686 kb on - strand, within Dshi_0381 at 363.739 kb on + strand, within Dshi_0381 at 363.811 kb on - strand, within Dshi_0381 at 363.854 kb on - strand, within Dshi_0381 at 363.978 kb on + strand, within Dshi_0381 at 363.986 kb on - strand, within Dshi_0381 at 364.106 kb on - strand, within Dshi_0381 at 364.293 kb on - strand at 364.335 kb on + strand at 364.517 kb on + strand at 364.707 kb on + strand, within Dshi_0382 at 364.797 kb on - strand, within Dshi_0382 at 365.050 kb on + strand, within Dshi_0382 at 365.058 kb on - strand, within Dshi_0382 at 365.080 kb on + strand, within Dshi_0382 at 365.117 kb on + strand, within Dshi_0382 at 365.184 kb on - strand, within Dshi_0382
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 362,578 + Dshi_0380 0.30 -1.5 362,586 - Dshi_0380 0.31 -1.1 362,590 + Dshi_0380 0.31 -2.3 362,620 - Dshi_0380 0.34 +2.1 362,651 - Dshi_0380 0.36 -0.3 362,670 + Dshi_0380 0.38 -0.1 362,879 - Dshi_0380 0.54 +0.2 362,986 + Dshi_0380 0.62 -2.1 363,093 + Dshi_0380 0.71 -0.6 363,096 - Dshi_0380 0.71 -3.4 363,288 - Dshi_0380 0.86 -0.4 363,306 - Dshi_0380 0.87 -1.7 363,346 + +1.5 363,346 + -0.1 363,346 + -1.3 363,436 + -1.7 363,541 - +0.8 363,609 + -3.5 363,611 + +2.0 363,686 - Dshi_0381 0.19 -0.4 363,739 + Dshi_0381 0.25 +1.2 363,811 - Dshi_0381 0.34 -1.5 363,854 - Dshi_0381 0.39 -1.1 363,978 + Dshi_0381 0.54 +1.1 363,986 - Dshi_0381 0.55 -1.8 364,106 - Dshi_0381 0.70 -1.0 364,293 - -0.5 364,335 + +0.1 364,517 + +1.5 364,707 + Dshi_0382 0.16 +0.5 364,797 - Dshi_0382 0.23 -0.4 365,050 + Dshi_0382 0.44 +0.5 365,058 - Dshi_0382 0.45 +0.5 365,080 + Dshi_0382 0.47 -0.1 365,117 + Dshi_0382 0.50 -1.7 365,184 - Dshi_0382 0.55 -1.1
Or see this region's nucleotide sequence