Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0374 and Dshi_0375 overlap by 4 nucleotides Dshi_0375 and Dshi_0376 are separated by 143 nucleotides Dshi_0376 and Dshi_0377 are separated by 16 nucleotides Dshi_0377 and Dshi_0378 are separated by 242 nucleotides Dshi_0378 and Dshi_0379 are separated by 132 nucleotides
Dshi_0374: Dshi_0374 - hypothetical protein (RefSeq), at 357,902 to 358,156
_0374
Dshi_0375: Dshi_0375 - ABC transporter related (RefSeq), at 358,153 to 358,974
_0375
Dshi_0376: Dshi_0376 - inner-membrane translocator (RefSeq), at 359,118 to 360,107
_0376
Dshi_0377: Dshi_0377 - hypothetical protein (RefSeq), at 360,124 to 360,432
_0377
Dshi_0378: Dshi_0378 - hypothetical protein (RefSeq), at 360,675 to 360,929
_0378
Dshi_0379: Dshi_0379 - inner-membrane translocator (RefSeq), at 361,062 to 362,138
_0379
Position (kb) 359
360
361 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 358.281 kb on - strand, within Dshi_0375 at 358.415 kb on - strand, within Dshi_0375 at 358.437 kb on + strand, within Dshi_0375 at 358.500 kb on + strand, within Dshi_0375 at 358.538 kb on + strand, within Dshi_0375 at 358.538 kb on + strand, within Dshi_0375 at 358.690 kb on - strand, within Dshi_0375 at 358.695 kb on - strand, within Dshi_0375 at 358.721 kb on - strand, within Dshi_0375 at 358.836 kb on + strand, within Dshi_0375 at 358.850 kb on + strand, within Dshi_0375 at 358.858 kb on - strand, within Dshi_0375 at 358.869 kb on + strand, within Dshi_0375 at 358.952 kb on + strand at 359.034 kb on - strand at 359.037 kb on + strand at 359.090 kb on + strand at 359.090 kb on + strand at 359.097 kb on + strand at 359.097 kb on + strand at 359.097 kb on + strand at 359.097 kb on + strand at 359.097 kb on + strand at 359.097 kb on + strand at 359.105 kb on - strand at 359.119 kb on + strand at 359.127 kb on - strand at 359.439 kb on - strand, within Dshi_0376 at 359.523 kb on - strand, within Dshi_0376 at 359.528 kb on - strand, within Dshi_0376 at 359.554 kb on + strand, within Dshi_0376 at 359.584 kb on - strand, within Dshi_0376 at 359.597 kb on - strand, within Dshi_0376 at 359.599 kb on + strand, within Dshi_0376 at 359.607 kb on - strand, within Dshi_0376 at 359.680 kb on - strand, within Dshi_0376 at 359.787 kb on + strand, within Dshi_0376 at 359.802 kb on + strand, within Dshi_0376 at 359.922 kb on - strand, within Dshi_0376 at 359.996 kb on + strand, within Dshi_0376 at 360.020 kb on + strand at 360.102 kb on + strand at 360.108 kb on - strand at 360.130 kb on - strand at 360.198 kb on + strand, within Dshi_0377 at 360.247 kb on - strand, within Dshi_0377 at 360.398 kb on + strand, within Dshi_0377 at 360.452 kb on - strand at 360.535 kb on + strand at 360.632 kb on - strand at 360.839 kb on + strand, within Dshi_0378 at 360.910 kb on - strand at 360.910 kb on - strand at 360.947 kb on + strand at 360.952 kb on + strand at 360.995 kb on + strand at 361.003 kb on - strand at 361.043 kb on + strand at 361.048 kb on - strand at 361.093 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 358,281 - Dshi_0375 0.16 +0.5 358,415 - Dshi_0375 0.32 -2.1 358,437 + Dshi_0375 0.35 -0.6 358,500 + Dshi_0375 0.42 -2.3 358,538 + Dshi_0375 0.47 -0.5 358,538 + Dshi_0375 0.47 -1.8 358,690 - Dshi_0375 0.65 -0.5 358,695 - Dshi_0375 0.66 -1.5 358,721 - Dshi_0375 0.69 +3.1 358,836 + Dshi_0375 0.83 -0.5 358,850 + Dshi_0375 0.85 -3.1 358,858 - Dshi_0375 0.86 -1.5 358,869 + Dshi_0375 0.87 -3.4 358,952 + -2.1 359,034 - -1.0 359,037 + +1.3 359,090 + -1.5 359,090 + -1.0 359,097 + -1.1 359,097 + -1.4 359,097 + +0.5 359,097 + -1.1 359,097 + +0.5 359,097 + -2.9 359,105 - +0.9 359,119 + -1.5 359,127 - -2.8 359,439 - Dshi_0376 0.32 -3.3 359,523 - Dshi_0376 0.41 -1.1 359,528 - Dshi_0376 0.41 -0.5 359,554 + Dshi_0376 0.44 +0.3 359,584 - Dshi_0376 0.47 -3.0 359,597 - Dshi_0376 0.48 -1.5 359,599 + Dshi_0376 0.49 -2.2 359,607 - Dshi_0376 0.49 +1.5 359,680 - Dshi_0376 0.57 -0.8 359,787 + Dshi_0376 0.68 +0.5 359,802 + Dshi_0376 0.69 -1.7 359,922 - Dshi_0376 0.81 -0.4 359,996 + Dshi_0376 0.89 +1.1 360,020 + -1.0 360,102 + -2.7 360,108 - -3.8 360,130 - +0.5 360,198 + Dshi_0377 0.24 -2.1 360,247 - Dshi_0377 0.40 -0.1 360,398 + Dshi_0377 0.89 -2.1 360,452 - +1.9 360,535 + +2.6 360,632 - -3.8 360,839 + Dshi_0378 0.64 -1.1 360,910 - -0.5 360,910 - -1.0 360,947 + -2.4 360,952 + -1.1 360,995 + -0.6 361,003 - +0.1 361,043 + -0.9 361,048 - -0.9 361,093 - +1.1
Or see this region's nucleotide sequence