Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0358 and Dshi_0359 are separated by 4 nucleotides Dshi_0359 and Dshi_0360 are separated by 53 nucleotides Dshi_0360 and Dshi_0361 are separated by 83 nucleotides
Dshi_0358: Dshi_0358 - phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (RefSeq), at 340,610 to 342,199
_0358
Dshi_0359: Dshi_0359 - lipoprotein signal peptidase (RefSeq), at 342,204 to 342,680
_0359
Dshi_0360: Dshi_0360 - hypothetical protein (RefSeq), at 342,734 to 343,279
_0360
Dshi_0361: Dshi_0361 - peptidase M16 domain protein (RefSeq), at 343,363 to 344,724
_0361
Position (kb) 342
343 Strain fitness (log2 ratio) -2
-1
0
1
2 at 342.198 kb on + strand at 342.241 kb on + strand at 342.329 kb on - strand, within Dshi_0359 at 342.427 kb on + strand, within Dshi_0359 at 342.448 kb on - strand, within Dshi_0359 at 342.571 kb on + strand, within Dshi_0359 at 342.630 kb on + strand, within Dshi_0359 at 342.645 kb on - strand at 342.843 kb on + strand, within Dshi_0360 at 342.932 kb on - strand, within Dshi_0360 at 343.039 kb on - strand, within Dshi_0360 at 343.045 kb on + strand, within Dshi_0360 at 343.264 kb on + strand at 343.307 kb on + strand at 343.333 kb on + strand at 343.333 kb on + strand at 343.333 kb on + strand at 343.434 kb on - strand at 343.454 kb on + strand at 343.577 kb on - strand, within Dshi_0361 at 343.602 kb on + strand, within Dshi_0361 at 343.656 kb on - strand, within Dshi_0361
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 342,198 + -0.8 342,241 + +0.1 342,329 - Dshi_0359 0.26 -2.5 342,427 + Dshi_0359 0.47 +1.1 342,448 - Dshi_0359 0.51 +0.3 342,571 + Dshi_0359 0.77 -2.5 342,630 + Dshi_0359 0.89 -0.7 342,645 - -2.5 342,843 + Dshi_0360 0.20 +0.5 342,932 - Dshi_0360 0.36 -1.1 343,039 - Dshi_0360 0.56 +0.0 343,045 + Dshi_0360 0.57 -1.1 343,264 + -0.2 343,307 + -0.5 343,333 + -1.8 343,333 + +2.1 343,333 + -0.7 343,434 - -1.5 343,454 + -1.7 343,577 - Dshi_0361 0.16 +0.5 343,602 + Dshi_0361 0.18 +0.5 343,656 - Dshi_0361 0.22 +1.5
Or see this region's nucleotide sequence