Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0356 and Dshi_0357 are separated by 2 nucleotides Dshi_0357 and Dshi_0358 are separated by 164 nucleotides Dshi_0358 and Dshi_0359 are separated by 4 nucleotides Dshi_0359 and Dshi_0360 are separated by 53 nucleotides
Dshi_0356: Dshi_0356 - protein of unknown function DUF6 transmembrane (RefSeq), at 339,214 to 340,104
_0356
Dshi_0357: Dshi_0357 - transcriptional regulator, ArsR family (RefSeq), at 340,107 to 340,445
_0357
Dshi_0358: Dshi_0358 - phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (RefSeq), at 340,610 to 342,199
_0358
Dshi_0359: Dshi_0359 - lipoprotein signal peptidase (RefSeq), at 342,204 to 342,680
_0359
Dshi_0360: Dshi_0360 - hypothetical protein (RefSeq), at 342,734 to 343,279
_0360
Position (kb) 340
341
342
343 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 339.615 kb on - strand, within Dshi_0356 at 339.698 kb on + strand, within Dshi_0356 at 339.801 kb on + strand, within Dshi_0356 at 339.863 kb on + strand, within Dshi_0356 at 339.863 kb on + strand, within Dshi_0356 at 339.878 kb on + strand, within Dshi_0356 at 339.923 kb on - strand, within Dshi_0356 at 339.958 kb on + strand, within Dshi_0356 at 339.959 kb on - strand, within Dshi_0356 at 339.970 kb on - strand, within Dshi_0356 at 339.970 kb on - strand, within Dshi_0356 at 339.970 kb on - strand, within Dshi_0356 at 340.026 kb on + strand at 340.072 kb on - strand at 340.093 kb on + strand at 340.174 kb on + strand, within Dshi_0357 at 340.174 kb on + strand, within Dshi_0357 at 340.192 kb on - strand, within Dshi_0357 at 340.234 kb on + strand, within Dshi_0357 at 340.272 kb on + strand, within Dshi_0357 at 340.304 kb on - strand, within Dshi_0357 at 340.426 kb on + strand at 340.441 kb on + strand at 340.479 kb on - strand at 340.502 kb on + strand at 340.572 kb on - strand at 340.633 kb on - strand at 342.198 kb on + strand at 342.241 kb on + strand at 342.329 kb on - strand, within Dshi_0359 at 342.427 kb on + strand, within Dshi_0359 at 342.448 kb on - strand, within Dshi_0359 at 342.571 kb on + strand, within Dshi_0359 at 342.630 kb on + strand, within Dshi_0359 at 342.645 kb on - strand at 342.843 kb on + strand, within Dshi_0360 at 342.932 kb on - strand, within Dshi_0360 at 343.039 kb on - strand, within Dshi_0360 at 343.045 kb on + strand, within Dshi_0360
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 339,615 - Dshi_0356 0.45 -2.0 339,698 + Dshi_0356 0.54 +0.5 339,801 + Dshi_0356 0.66 -2.4 339,863 + Dshi_0356 0.73 +1.1 339,863 + Dshi_0356 0.73 +0.5 339,878 + Dshi_0356 0.75 +0.8 339,923 - Dshi_0356 0.80 -1.2 339,958 + Dshi_0356 0.84 -1.9 339,959 - Dshi_0356 0.84 +2.1 339,970 - Dshi_0356 0.85 +0.5 339,970 - Dshi_0356 0.85 +2.5 339,970 - Dshi_0356 0.85 +0.5 340,026 + -0.1 340,072 - -3.2 340,093 + +0.7 340,174 + Dshi_0357 0.20 +0.5 340,174 + Dshi_0357 0.20 +1.1 340,192 - Dshi_0357 0.25 -1.8 340,234 + Dshi_0357 0.37 +1.5 340,272 + Dshi_0357 0.49 -0.7 340,304 - Dshi_0357 0.58 +2.5 340,426 + -0.5 340,441 + -1.3 340,479 - -1.9 340,502 + +0.9 340,572 - -0.9 340,633 - +0.5 342,198 + -0.8 342,241 + +0.1 342,329 - Dshi_0359 0.26 -2.5 342,427 + Dshi_0359 0.47 +1.1 342,448 - Dshi_0359 0.51 +0.3 342,571 + Dshi_0359 0.77 -2.5 342,630 + Dshi_0359 0.89 -0.7 342,645 - -2.5 342,843 + Dshi_0360 0.20 +0.5 342,932 - Dshi_0360 0.36 -1.1 343,039 - Dshi_0360 0.56 +0.0 343,045 + Dshi_0360 0.57 -1.1
Or see this region's nucleotide sequence