Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0354 and Dshi_0355 are separated by 55 nucleotides Dshi_0355 and Dshi_0356 are separated by 50 nucleotides Dshi_0356 and Dshi_0357 are separated by 2 nucleotides Dshi_0357 and Dshi_0358 are separated by 164 nucleotides
Dshi_0354: Dshi_0354 - NAD(P)H dehydrogenase (quinone) (RefSeq), at 337,582 to 338,226
_0354
Dshi_0355: Dshi_0355 - transcriptional regulator, LysR family (RefSeq), at 338,282 to 339,163
_0355
Dshi_0356: Dshi_0356 - protein of unknown function DUF6 transmembrane (RefSeq), at 339,214 to 340,104
_0356
Dshi_0357: Dshi_0357 - transcriptional regulator, ArsR family (RefSeq), at 340,107 to 340,445
_0357
Dshi_0358: Dshi_0358 - phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (RefSeq), at 340,610 to 342,199
_0358
Position (kb) 339
340
341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 338.315 kb on + strand at 338.421 kb on + strand, within Dshi_0355 at 338.424 kb on - strand, within Dshi_0355 at 338.435 kb on - strand, within Dshi_0355 at 338.471 kb on + strand, within Dshi_0355 at 338.490 kb on - strand, within Dshi_0355 at 338.497 kb on + strand, within Dshi_0355 at 338.547 kb on + strand, within Dshi_0355 at 338.562 kb on - strand, within Dshi_0355 at 338.597 kb on + strand, within Dshi_0355 at 338.743 kb on - strand, within Dshi_0355 at 338.753 kb on - strand, within Dshi_0355 at 338.773 kb on - strand, within Dshi_0355 at 338.798 kb on - strand, within Dshi_0355 at 338.800 kb on + strand, within Dshi_0355 at 338.893 kb on + strand, within Dshi_0355 at 338.893 kb on - strand, within Dshi_0355 at 338.980 kb on + strand, within Dshi_0355 at 338.980 kb on + strand, within Dshi_0355 at 338.985 kb on + strand, within Dshi_0355 at 339.141 kb on - strand at 339.157 kb on + strand at 339.165 kb on - strand at 339.216 kb on + strand at 339.427 kb on + strand, within Dshi_0356 at 339.474 kb on + strand, within Dshi_0356 at 339.533 kb on - strand, within Dshi_0356 at 339.592 kb on + strand, within Dshi_0356 at 339.615 kb on - strand, within Dshi_0356 at 339.698 kb on + strand, within Dshi_0356 at 339.801 kb on + strand, within Dshi_0356 at 339.863 kb on + strand, within Dshi_0356 at 339.863 kb on + strand, within Dshi_0356 at 339.878 kb on + strand, within Dshi_0356 at 339.923 kb on - strand, within Dshi_0356 at 339.958 kb on + strand, within Dshi_0356 at 339.959 kb on - strand, within Dshi_0356 at 339.970 kb on - strand, within Dshi_0356 at 339.970 kb on - strand, within Dshi_0356 at 339.970 kb on - strand, within Dshi_0356 at 340.026 kb on + strand at 340.072 kb on - strand at 340.093 kb on + strand at 340.174 kb on + strand, within Dshi_0357 at 340.174 kb on + strand, within Dshi_0357 at 340.192 kb on - strand, within Dshi_0357 at 340.234 kb on + strand, within Dshi_0357 at 340.272 kb on + strand, within Dshi_0357 at 340.304 kb on - strand, within Dshi_0357 at 340.426 kb on + strand at 340.441 kb on + strand at 340.479 kb on - strand at 340.502 kb on + strand at 340.572 kb on - strand at 340.633 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 338,315 + +0.5 338,421 + Dshi_0355 0.16 +0.5 338,424 - Dshi_0355 0.16 -1.0 338,435 - Dshi_0355 0.17 +0.5 338,471 + Dshi_0355 0.21 -0.8 338,490 - Dshi_0355 0.24 +1.5 338,497 + Dshi_0355 0.24 -0.7 338,547 + Dshi_0355 0.30 -1.8 338,562 - Dshi_0355 0.32 +0.4 338,597 + Dshi_0355 0.36 -0.5 338,743 - Dshi_0355 0.52 +1.7 338,753 - Dshi_0355 0.53 -0.5 338,773 - Dshi_0355 0.56 +0.5 338,798 - Dshi_0355 0.59 +0.5 338,800 + Dshi_0355 0.59 +0.2 338,893 + Dshi_0355 0.69 -0.0 338,893 - Dshi_0355 0.69 -2.9 338,980 + Dshi_0355 0.79 +1.3 338,980 + Dshi_0355 0.79 -2.0 338,985 + Dshi_0355 0.80 -2.6 339,141 - +1.5 339,157 + -0.5 339,165 - -1.0 339,216 + +1.5 339,427 + Dshi_0356 0.24 +2.9 339,474 + Dshi_0356 0.29 -1.8 339,533 - Dshi_0356 0.36 -1.9 339,592 + Dshi_0356 0.42 -2.5 339,615 - Dshi_0356 0.45 -2.0 339,698 + Dshi_0356 0.54 +0.5 339,801 + Dshi_0356 0.66 -2.4 339,863 + Dshi_0356 0.73 +1.1 339,863 + Dshi_0356 0.73 +0.5 339,878 + Dshi_0356 0.75 +0.8 339,923 - Dshi_0356 0.80 -1.2 339,958 + Dshi_0356 0.84 -1.9 339,959 - Dshi_0356 0.84 +2.1 339,970 - Dshi_0356 0.85 +0.5 339,970 - Dshi_0356 0.85 +2.5 339,970 - Dshi_0356 0.85 +0.5 340,026 + -0.1 340,072 - -3.2 340,093 + +0.7 340,174 + Dshi_0357 0.20 +0.5 340,174 + Dshi_0357 0.20 +1.1 340,192 - Dshi_0357 0.25 -1.8 340,234 + Dshi_0357 0.37 +1.5 340,272 + Dshi_0357 0.49 -0.7 340,304 - Dshi_0357 0.58 +2.5 340,426 + -0.5 340,441 + -1.3 340,479 - -1.9 340,502 + +0.9 340,572 - -0.9 340,633 - +0.5
Or see this region's nucleotide sequence