Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0279 and Dshi_0280 are separated by 291 nucleotides Dshi_0280 and Dshi_0281 are separated by 163 nucleotides Dshi_0281 and Dshi_0282 are separated by 656 nucleotides
Dshi_0279: Dshi_0279 - hypothetical protein (RefSeq), at 281,137 to 281,487
_0279
Dshi_0280: Dshi_0280 - hypothetical protein (RefSeq), at 281,779 to 282,159
_0280
Dshi_0281: Dshi_0281 - YHS domain protein (RefSeq), at 282,323 to 282,814
_0281
Dshi_0282: Dshi_0282 - hypothetical protein (RefSeq), at 283,471 to 283,737
_0282
Position (kb) 282
283 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 281.415 kb on - strand, within Dshi_0279 at 281.891 kb on - strand, within Dshi_0280 at 281.904 kb on + strand, within Dshi_0280 at 282.017 kb on - strand, within Dshi_0280 at 282.137 kb on - strand at 282.166 kb on + strand at 282.194 kb on + strand at 282.200 kb on + strand at 282.231 kb on - strand at 282.231 kb on - strand at 282.242 kb on + strand at 282.270 kb on - strand at 282.316 kb on + strand at 282.321 kb on + strand at 282.321 kb on + strand at 282.329 kb on - strand at 282.403 kb on + strand, within Dshi_0281 at 282.403 kb on + strand, within Dshi_0281 at 282.508 kb on + strand, within Dshi_0281 at 282.529 kb on - strand, within Dshi_0281 at 282.620 kb on - strand, within Dshi_0281 at 282.620 kb on - strand, within Dshi_0281 at 282.644 kb on - strand, within Dshi_0281 at 282.649 kb on - strand, within Dshi_0281 at 282.651 kb on - strand, within Dshi_0281 at 282.667 kb on + strand, within Dshi_0281 at 282.735 kb on - strand, within Dshi_0281 at 282.743 kb on + strand, within Dshi_0281 at 282.743 kb on + strand, within Dshi_0281 at 282.751 kb on - strand, within Dshi_0281 at 282.755 kb on + strand, within Dshi_0281 at 282.763 kb on - strand, within Dshi_0281 at 282.769 kb on + strand at 282.789 kb on + strand at 282.804 kb on + strand at 282.810 kb on - strand at 282.816 kb on + strand at 282.832 kb on + strand at 282.840 kb on - strand at 282.879 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.890 kb on + strand at 282.896 kb on + strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.898 kb on - strand at 282.909 kb on + strand at 282.913 kb on + strand at 282.950 kb on + strand at 282.950 kb on + strand at 282.950 kb on + strand at 282.958 kb on - strand at 282.988 kb on - strand at 283.034 kb on - strand at 283.041 kb on + strand at 283.053 kb on - strand at 283.057 kb on - strand at 283.060 kb on + strand at 283.064 kb on + strand at 283.066 kb on + strand at 283.066 kb on + strand at 283.072 kb on - strand at 283.073 kb on - strand at 283.092 kb on + strand at 283.104 kb on + strand at 283.115 kb on + strand at 283.115 kb on + strand at 283.122 kb on + strand at 283.123 kb on - strand at 283.130 kb on - strand at 283.157 kb on - strand at 283.214 kb on + strand at 283.219 kb on + strand at 283.219 kb on + strand at 283.219 kb on + strand at 283.219 kb on + strand at 283.226 kb on + strand at 283.226 kb on + strand at 283.226 kb on + strand at 283.227 kb on - strand at 283.234 kb on - strand at 283.234 kb on - strand at 283.257 kb on + strand at 283.257 kb on + strand at 283.263 kb on + strand at 283.337 kb on + strand at 283.351 kb on - strand at 283.353 kb on + strand at 283.358 kb on + strand at 283.371 kb on + strand at 283.379 kb on - strand at 283.382 kb on + strand at 283.389 kb on + strand at 283.389 kb on + strand at 283.389 kb on + strand at 283.389 kb on + strand at 283.389 kb on + strand at 283.389 kb on + strand at 283.390 kb on - strand at 283.390 kb on - strand at 283.394 kb on + strand at 283.397 kb on - strand at 283.404 kb on + strand at 283.404 kb on + strand at 283.457 kb on - strand at 283.504 kb on - strand, within Dshi_0282 at 283.522 kb on - strand, within Dshi_0282 at 283.542 kb on + strand, within Dshi_0282 at 283.550 kb on - strand, within Dshi_0282 at 283.566 kb on + strand, within Dshi_0282 at 283.577 kb on - strand, within Dshi_0282 at 283.579 kb on + strand, within Dshi_0282 at 283.579 kb on + strand, within Dshi_0282 at 283.579 kb on + strand, within Dshi_0282 at 283.579 kb on + strand, within Dshi_0282 at 283.579 kb on + strand, within Dshi_0282 at 283.579 kb on + strand, within Dshi_0282 at 283.579 kb on + strand, within Dshi_0282 at 283.584 kb on - strand, within Dshi_0282 at 283.587 kb on - strand, within Dshi_0282 at 283.587 kb on - strand, within Dshi_0282 at 283.587 kb on - strand, within Dshi_0282 at 283.597 kb on - strand, within Dshi_0282 at 283.607 kb on + strand, within Dshi_0282 at 283.643 kb on + strand, within Dshi_0282 at 283.643 kb on + strand, within Dshi_0282 at 283.643 kb on + strand, within Dshi_0282 at 283.648 kb on + strand, within Dshi_0282 at 283.648 kb on + strand, within Dshi_0282 at 283.651 kb on - strand, within Dshi_0282 at 283.655 kb on - strand, within Dshi_0282 at 283.663 kb on - strand, within Dshi_0282 at 283.677 kb on + strand, within Dshi_0282 at 283.700 kb on + strand, within Dshi_0282 at 283.711 kb on + strand at 283.711 kb on + strand at 283.713 kb on - strand at 283.724 kb on - strand at 283.732 kb on + strand at 283.732 kb on + strand at 283.732 kb on + strand at 283.746 kb on + strand at 283.748 kb on + strand at 283.748 kb on + strand at 283.748 kb on + strand at 283.748 kb on + strand at 283.750 kb on + strand at 283.756 kb on - strand at 283.756 kb on - strand at 283.756 kb on - strand at 283.761 kb on + strand at 283.766 kb on + strand at 283.776 kb on + strand at 283.784 kb on - strand at 283.787 kb on - strand at 283.787 kb on - strand at 283.798 kb on + strand at 283.802 kb on + strand at 283.813 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 281,415 - Dshi_0279 0.79 -0.2 281,891 - Dshi_0280 0.29 +0.8 281,904 + Dshi_0280 0.33 +0.4 282,017 - Dshi_0280 0.62 +0.6 282,137 - +0.4 282,166 + +0.6 282,194 + -0.1 282,200 + -0.5 282,231 - +0.4 282,231 - -1.2 282,242 + +0.5 282,270 - -0.9 282,316 + -0.2 282,321 + -0.3 282,321 + +0.6 282,329 - +1.2 282,403 + Dshi_0281 0.16 +2.1 282,403 + Dshi_0281 0.16 -0.7 282,508 + Dshi_0281 0.38 -1.4 282,529 - Dshi_0281 0.42 -0.2 282,620 - Dshi_0281 0.60 -0.7 282,620 - Dshi_0281 0.60 -0.0 282,644 - Dshi_0281 0.65 +1.2 282,649 - Dshi_0281 0.66 +2.2 282,651 - Dshi_0281 0.67 +0.6 282,667 + Dshi_0281 0.70 +0.0 282,735 - Dshi_0281 0.84 -1.9 282,743 + Dshi_0281 0.85 -1.4 282,743 + Dshi_0281 0.85 +1.1 282,751 - Dshi_0281 0.87 -0.2 282,755 + Dshi_0281 0.88 +0.8 282,763 - Dshi_0281 0.89 -0.8 282,769 + -0.5 282,789 + -0.1 282,804 + +0.1 282,810 - +0.9 282,816 + -2.7 282,832 + -0.2 282,840 - -0.5 282,879 + -0.6 282,890 + -1.8 282,890 + +1.3 282,890 + +1.1 282,890 + -0.4 282,890 + -0.3 282,890 + -0.3 282,890 + -0.4 282,890 + +0.2 282,890 + +0.6 282,890 + +1.6 282,890 + +0.4 282,890 + +1.4 282,890 + -0.7 282,890 + -0.4 282,896 + -0.5 282,898 - +0.4 282,898 - +0.5 282,898 - -0.4 282,898 - +0.6 282,898 - +1.1 282,898 - +0.0 282,898 - +0.6 282,898 - +0.1 282,898 - -0.4 282,898 - -0.6 282,898 - -1.4 282,898 - +2.8 282,898 - +0.6 282,909 + -0.6 282,913 + +1.2 282,950 + -0.8 282,950 + +0.2 282,950 + +0.9 282,958 - +0.6 282,988 - +0.6 283,034 - -0.2 283,041 + -0.7 283,053 - +0.2 283,057 - +0.3 283,060 + +0.2 283,064 + -2.6 283,066 + -2.5 283,066 + -0.7 283,072 - -0.5 283,073 - +2.2 283,092 + -0.5 283,104 + -0.1 283,115 + -0.3 283,115 + +1.3 283,122 + -0.5 283,123 - +0.2 283,130 - +0.2 283,157 - +0.2 283,214 + -0.4 283,219 + -0.9 283,219 + +0.6 283,219 + -1.4 283,219 + -0.8 283,226 + -2.2 283,226 + +0.4 283,226 + +0.6 283,227 - +0.4 283,234 - -0.7 283,234 - -0.4 283,257 + -2.5 283,257 + -1.0 283,263 + -1.2 283,337 + -0.3 283,351 - +0.5 283,353 + +1.6 283,358 + -0.4 283,371 + +4.0 283,379 - -2.4 283,382 + -1.2 283,389 + -1.0 283,389 + +0.2 283,389 + +2.2 283,389 + -1.4 283,389 + -0.7 283,389 + +1.1 283,390 - -0.3 283,390 - +0.4 283,394 + +0.6 283,397 - -1.7 283,404 + -2.2 283,404 + +0.2 283,457 - -0.6 283,504 - Dshi_0282 0.12 -1.0 283,522 - Dshi_0282 0.19 +1.3 283,542 + Dshi_0282 0.27 +2.1 283,550 - Dshi_0282 0.30 +1.3 283,566 + Dshi_0282 0.36 -0.6 283,577 - Dshi_0282 0.40 +1.1 283,579 + Dshi_0282 0.40 +3.4 283,579 + Dshi_0282 0.40 -1.3 283,579 + Dshi_0282 0.40 +0.5 283,579 + Dshi_0282 0.40 -1.6 283,579 + Dshi_0282 0.40 +4.3 283,579 + Dshi_0282 0.40 -1.0 283,579 + Dshi_0282 0.40 -0.8 283,584 - Dshi_0282 0.42 -0.2 283,587 - Dshi_0282 0.43 +0.3 283,587 - Dshi_0282 0.43 +2.6 283,587 - Dshi_0282 0.43 +1.9 283,597 - Dshi_0282 0.47 -0.3 283,607 + Dshi_0282 0.51 +0.4 283,643 + Dshi_0282 0.64 -0.9 283,643 + Dshi_0282 0.64 -0.9 283,643 + Dshi_0282 0.64 +0.2 283,648 + Dshi_0282 0.66 -0.0 283,648 + Dshi_0282 0.66 -0.5 283,651 - Dshi_0282 0.67 -0.0 283,655 - Dshi_0282 0.69 -0.0 283,663 - Dshi_0282 0.72 +3.0 283,677 + Dshi_0282 0.77 -1.7 283,700 + Dshi_0282 0.86 +0.4 283,711 + +0.1 283,711 + +0.6 283,713 - -0.0 283,724 - +0.4 283,732 + +1.2 283,732 + -0.0 283,732 + -0.4 283,746 + +0.2 283,748 + +0.2 283,748 + -0.4 283,748 + -2.9 283,748 + -0.0 283,750 + +0.4 283,756 - -0.2 283,756 - -1.1 283,756 - -0.1 283,761 + -0.6 283,766 + -0.4 283,776 + -0.5 283,784 - +1.0 283,787 - +0.6 283,787 - -0.4 283,798 + +2.2 283,802 + -0.4 283,813 + -1.6
Or see this region's nucleotide sequence