Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0257 and Dshi_0258 are separated by 194 nucleotides Dshi_0258 and Dshi_0259 are separated by 201 nucleotides Dshi_0259 and Dshi_0260 are separated by 103 nucleotides Dshi_0260 and Dshi_0261 are separated by 1 nucleotides
Dshi_0257: Dshi_0257 - peptidase S8 and S53 subtilisin kexin sedolisin (RefSeq), at 254,727 to 256,076
_0257
Dshi_0258: Dshi_0258 - preprotein translocase, SecE subunit (RefSeq), at 256,271 to 256,471
_0258
Dshi_0259: Dshi_0259 - NusG antitermination factor (RefSeq), at 256,673 to 257,206
_0259
Dshi_0260: Dshi_0260 - ribosomal protein L11 (RefSeq), at 257,310 to 257,735
_0260
Dshi_0261: Dshi_0261 - ribosomal protein L1 (RefSeq), at 257,737 to 258,435
_0261
Position (kb) 256
257
258 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 255.771 kb on - strand, within Dshi_0257 at 255.785 kb on + strand, within Dshi_0257 at 255.838 kb on - strand, within Dshi_0257 at 255.849 kb on - strand, within Dshi_0257 at 255.877 kb on + strand, within Dshi_0257 at 255.890 kb on + strand, within Dshi_0257 at 255.914 kb on - strand, within Dshi_0257 at 255.952 kb on + strand at 255.960 kb on - strand at 255.960 kb on - strand at 255.960 kb on - strand at 255.976 kb on - strand at 256.021 kb on + strand at 256.058 kb on + strand at 256.058 kb on - strand at 256.058 kb on - strand at 256.066 kb on + strand at 256.069 kb on - strand at 256.120 kb on + strand at 256.125 kb on + strand at 256.125 kb on + strand at 256.133 kb on - strand at 256.137 kb on + strand at 256.138 kb on - strand at 256.166 kb on + strand at 256.183 kb on + strand at 256.183 kb on + strand at 256.183 kb on + strand at 256.183 kb on + strand at 256.183 kb on + strand at 256.183 kb on + strand at 256.183 kb on + strand at 256.183 kb on + strand at 256.191 kb on - strand at 256.191 kb on - strand at 256.191 kb on - strand at 256.191 kb on - strand at 256.191 kb on - strand at 256.192 kb on - strand at 256.470 kb on + strand at 256.510 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 255,771 - Dshi_0257 0.77 -3.8 255,785 + Dshi_0257 0.78 -1.0 255,838 - Dshi_0257 0.82 +0.2 255,849 - Dshi_0257 0.83 +0.6 255,877 + Dshi_0257 0.85 -0.7 255,890 + Dshi_0257 0.86 +0.1 255,914 - Dshi_0257 0.88 +2.2 255,952 + -1.2 255,960 - +3.2 255,960 - -0.8 255,960 - +0.6 255,976 - +2.0 256,021 + -1.8 256,058 + -1.5 256,058 - +1.6 256,058 - -1.3 256,066 + -0.9 256,069 - -2.1 256,120 + +0.0 256,125 + -1.9 256,125 + -0.9 256,133 - -2.2 256,137 + +0.4 256,138 - -0.0 256,166 + -0.5 256,183 + -0.5 256,183 + -0.0 256,183 + +2.6 256,183 + +0.5 256,183 + -0.9 256,183 + -0.6 256,183 + +0.6 256,183 + -1.3 256,191 - -2.2 256,191 - -0.9 256,191 - -2.7 256,191 - -0.0 256,191 - -2.4 256,192 - -2.2 256,470 + +3.0 256,510 - -1.2
Or see this region's nucleotide sequence