Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0182 and Dshi_0183 overlap by 8 nucleotides Dshi_0183 and Dshi_0184 overlap by 4 nucleotides Dshi_0184 and Dshi_0185 are separated by 39 nucleotides Dshi_0185 and Dshi_0186 overlap by 4 nucleotides
Dshi_0182: Dshi_0182 - ribonuclease H (RefSeq), at 185,190 to 185,663
_0182
Dshi_0183: Dshi_0183 - Methyltransferase type 11 (RefSeq), at 185,656 to 186,255
_0183
Dshi_0184: Dshi_0184 - hypothetical protein (RefSeq), at 186,252 to 186,704
_0184
Dshi_0185: Dshi_0185 - phosphatidate cytidylyltransferase (RefSeq), at 186,744 to 187,694
_0185
Dshi_0186: Dshi_0186 - phospholipid/glycerol acyltransferase (RefSeq), at 187,691 to 188,344
_0186
Position (kb) 186
187 Strain fitness (log2 ratio) -2
-1
0
1
2 at 185.597 kb on - strand, within Dshi_0182 at 185.678 kb on - strand at 185.801 kb on + strand, within Dshi_0183 at 185.801 kb on + strand, within Dshi_0183 at 185.844 kb on + strand, within Dshi_0183 at 186.169 kb on - strand, within Dshi_0183 at 186.425 kb on + strand, within Dshi_0184 at 186.627 kb on - strand, within Dshi_0184 at 186.741 kb on + strand at 186.749 kb on - strand at 186.749 kb on - strand at 186.855 kb on + strand, within Dshi_0185 at 186.952 kb on + strand, within Dshi_0185 at 186.952 kb on + strand, within Dshi_0185 at 186.977 kb on + strand, within Dshi_0185 at 187.004 kb on - strand, within Dshi_0185 at 187.065 kb on - strand, within Dshi_0185 at 187.140 kb on - strand, within Dshi_0185 at 187.325 kb on - strand, within Dshi_0185 at 187.330 kb on - strand, within Dshi_0185 at 187.335 kb on - strand, within Dshi_0185 at 187.352 kb on - strand, within Dshi_0185 at 187.543 kb on + strand, within Dshi_0185
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 185,597 - Dshi_0182 0.86 +0.7 185,678 - -2.0 185,801 + Dshi_0183 0.24 -0.8 185,801 + Dshi_0183 0.24 +0.7 185,844 + Dshi_0183 0.31 -1.3 186,169 - Dshi_0183 0.85 -0.3 186,425 + Dshi_0184 0.38 -2.3 186,627 - Dshi_0184 0.83 -0.5 186,741 + -1.9 186,749 - +0.1 186,749 - -2.0 186,855 + Dshi_0185 0.12 -1.2 186,952 + Dshi_0185 0.22 -0.2 186,952 + Dshi_0185 0.22 +0.5 186,977 + Dshi_0185 0.25 -2.3 187,004 - Dshi_0185 0.27 -2.5 187,065 - Dshi_0185 0.34 -1.9 187,140 - Dshi_0185 0.42 -0.1 187,325 - Dshi_0185 0.61 +0.7 187,330 - Dshi_0185 0.62 +0.3 187,335 - Dshi_0185 0.62 +2.7 187,352 - Dshi_0185 0.64 +1.1 187,543 + Dshi_0185 0.84 -0.7
Or see this region's nucleotide sequence