Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0175 and Dshi_0176 are separated by 123 nucleotides Dshi_0176 and Dshi_0177 are separated by 60 nucleotides Dshi_0177 and Dshi_0178 are separated by 3 nucleotides
Dshi_0175: Dshi_0175 - precorrin-3B C17-methyltransferase (RefSeq), at 178,678 to 180,483
_0175
Dshi_0176: Dshi_0176 - precorrin-4 C11-methyltransferase (RefSeq), at 180,607 to 181,383
_0176
Dshi_0177: Dshi_0177 - hypothetical protein (RefSeq), at 181,444 to 181,797
_0177
Dshi_0178: Dshi_0178 - aminotransferase class I and II (RefSeq), at 181,801 to 182,973
_0178
Position (kb) 181
182 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 180.583 kb on - strand at 180.583 kb on - strand at 181.416 kb on + strand at 181.696 kb on - strand, within Dshi_0177 at 181.908 kb on + strand at 181.916 kb on - strand at 181.979 kb on - strand, within Dshi_0178 at 182.002 kb on + strand, within Dshi_0178 at 182.002 kb on + strand, within Dshi_0178 at 182.351 kb on - strand, within Dshi_0178 at 182.361 kb on - strand, within Dshi_0178 at 182.438 kb on + strand, within Dshi_0178 at 182.438 kb on + strand, within Dshi_0178 at 182.530 kb on + strand, within Dshi_0178 at 182.539 kb on - strand at 182.539 kb on - strand, within Dshi_0178 at 182.563 kb on + strand, within Dshi_0178 at 182.609 kb on + strand, within Dshi_0178 at 182.668 kb on + strand, within Dshi_0178 at 182.730 kb on - strand, within Dshi_0178 at 182.770 kb on + strand, within Dshi_0178
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 180,583 - +0.7 180,583 - +0.7 181,416 + -0.9 181,696 - Dshi_0177 0.71 +2.7 181,908 + +0.5 181,916 - +0.1 181,979 - Dshi_0178 0.15 -2.1 182,002 + Dshi_0178 0.17 -0.1 182,002 + Dshi_0178 0.17 +2.3 182,351 - Dshi_0178 0.47 +0.3 182,361 - Dshi_0178 0.48 -2.3 182,438 + Dshi_0178 0.54 -4.0 182,438 + Dshi_0178 0.54 +0.3 182,530 + Dshi_0178 0.62 +0.1 182,539 - -0.3 182,539 - Dshi_0178 0.63 +0.0 182,563 + Dshi_0178 0.65 -0.8 182,609 + Dshi_0178 0.69 -1.7 182,668 + Dshi_0178 0.74 -0.9 182,730 - Dshi_0178 0.79 -0.3 182,770 + Dshi_0178 0.83 -2.1
Or see this region's nucleotide sequence