Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0142 and Dshi_0143 are separated by 314 nucleotides Dshi_0143 and Dshi_0144 are separated by 34 nucleotides Dshi_0144 and Dshi_0145 are separated by 160 nucleotides
Dshi_0142: Dshi_0142 - penicillin-binding protein, 1A family (RefSeq), at 140,693 to 142,882
_0142
Dshi_0143: Dshi_0143 - nitrogen regulatory protein P-II (RefSeq), at 143,197 to 143,535
_0143
Dshi_0144: Dshi_0144 - ammonium transporter (RefSeq), at 143,570 to 144,883
_0144
Dshi_0145: Dshi_0145 - Aspartate transaminase (RefSeq), at 145,044 to 146,222
_0145
Position (kb)
143
144
145 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 142.841 kb on - strand at 142.917 kb on + strand at 142.942 kb on - strand at 142.950 kb on - strand at 142.979 kb on - strand at 143.005 kb on - strand at 143.187 kb on + strand at 143.300 kb on - strand, within Dshi_0143 at 143.743 kb on + strand, within Dshi_0144 at 143.830 kb on - strand, within Dshi_0144 at 143.921 kb on - strand, within Dshi_0144 at 143.939 kb on + strand, within Dshi_0144 at 144.199 kb on - strand, within Dshi_0144 at 144.224 kb on - strand, within Dshi_0144 at 144.240 kb on - strand, within Dshi_0144 at 144.264 kb on + strand, within Dshi_0144 at 144.304 kb on - strand, within Dshi_0144 at 144.456 kb on - strand, within Dshi_0144 at 144.472 kb on - strand, within Dshi_0144 at 144.513 kb on + strand, within Dshi_0144 at 144.570 kb on + strand, within Dshi_0144 at 144.630 kb on + strand, within Dshi_0144 at 144.677 kb on - strand, within Dshi_0144 at 144.711 kb on - strand, within Dshi_0144 at 144.761 kb on - strand at 144.761 kb on - strand at 144.869 kb on - strand at 144.885 kb on - strand at 144.949 kb on - strand at 144.949 kb on - strand at 144.956 kb on + strand at 144.964 kb on + strand at 144.988 kb on - strand at 145.037 kb on + strand at 145.258 kb on + strand, within Dshi_0145 at 145.260 kb on - strand, within Dshi_0145 at 145.316 kb on + strand, within Dshi_0145 at 145.364 kb on + strand at 145.412 kb on - strand, within Dshi_0145 at 145.522 kb on + strand, within Dshi_0145 at 145.726 kb on + strand, within Dshi_0145
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 142,841 - -1.8 142,917 + +1.3 142,942 - +0.3 142,950 - +0.7 142,979 - -0.4 143,005 - -1.2 143,187 + -0.7 143,300 - Dshi_0143 0.30 +0.7 143,743 + Dshi_0144 0.13 -0.7 143,830 - Dshi_0144 0.20 +0.9 143,921 - Dshi_0144 0.27 -0.9 143,939 + Dshi_0144 0.28 +1.2 144,199 - Dshi_0144 0.48 -0.2 144,224 - Dshi_0144 0.50 -0.6 144,240 - Dshi_0144 0.51 +1.0 144,264 + Dshi_0144 0.53 -2.1 144,304 - Dshi_0144 0.56 +2.7 144,456 - Dshi_0144 0.67 +0.4 144,472 - Dshi_0144 0.69 -3.4 144,513 + Dshi_0144 0.72 +2.1 144,570 + Dshi_0144 0.76 +0.3 144,630 + Dshi_0144 0.81 -0.3 144,677 - Dshi_0144 0.84 +1.8 144,711 - Dshi_0144 0.87 -0.3 144,761 - +1.7 144,761 - +0.7 144,869 - -1.3 144,885 - -0.7 144,949 - +0.0 144,949 - +2.8 144,956 + -0.1 144,964 + +1.1 144,988 - -0.2 145,037 + +0.7 145,258 + Dshi_0145 0.18 -0.8 145,260 - Dshi_0145 0.18 +0.3 145,316 + Dshi_0145 0.23 +0.3 145,364 + +0.7 145,412 - Dshi_0145 0.31 -1.3 145,522 + Dshi_0145 0.41 +0.3 145,726 + Dshi_0145 0.58 -0.3
Or see this region's nucleotide sequence