Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0053 and Dshi_0054 overlap by 22 nucleotides Dshi_0054 and Dshi_0055 are separated by 14 nucleotides Dshi_0055 and Dshi_0056 overlap by 4 nucleotides Dshi_0056 and Dshi_0057 overlap by 14 nucleotides
Dshi_0053: Dshi_0053 - HI0933 family protein (RefSeq), at 49,943 to 51,163
_0053
Dshi_0054: Dshi_0054 - Glutathione S-transferase domain (RefSeq), at 51,142 to 51,732
_0054
Dshi_0055: Dshi_0055 - DNA polymerase III, delta (RefSeq), at 51,747 to 52,772
_0055
Dshi_0056: Dshi_0056 - hypothetical protein (RefSeq), at 52,769 to 53,263
_0056
Dshi_0057: Dshi_0057 - leucyl-tRNA synthetase (RefSeq), at 53,250 to 55,859
_0057
Position (kb)
51
52
53 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 51.271 kb on - strand, within Dshi_0054 at 51.321 kb on - strand, within Dshi_0054 at 51.358 kb on - strand, within Dshi_0054 at 51.369 kb on - strand, within Dshi_0054 at 51.396 kb on + strand, within Dshi_0054 at 51.419 kb on + strand, within Dshi_0054 at 51.419 kb on + strand, within Dshi_0054 at 51.421 kb on + strand, within Dshi_0054 at 51.427 kb on - strand, within Dshi_0054 at 51.429 kb on - strand, within Dshi_0054 at 51.474 kb on - strand, within Dshi_0054 at 51.488 kb on - strand, within Dshi_0054 at 51.657 kb on + strand, within Dshi_0054 at 51.707 kb on + strand at 51.709 kb on + strand at 51.717 kb on - strand at 51.726 kb on - strand at 51.736 kb on - strand at 51.738 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 51,271 - Dshi_0054 0.22 -2.5 51,321 - Dshi_0054 0.30 -0.3 51,358 - Dshi_0054 0.37 -0.1 51,369 - Dshi_0054 0.38 +0.7 51,396 + Dshi_0054 0.43 -0.6 51,419 + Dshi_0054 0.47 -1.3 51,419 + Dshi_0054 0.47 -1.9 51,421 + Dshi_0054 0.47 -2.5 51,427 - Dshi_0054 0.48 -0.9 51,429 - Dshi_0054 0.49 +2.3 51,474 - Dshi_0054 0.56 -1.7 51,488 - Dshi_0054 0.59 -2.3 51,657 + Dshi_0054 0.87 +0.2 51,707 + +0.7 51,709 + +0.2 51,717 - +0.7 51,726 - -0.3 51,736 - +1.5 51,738 + -0.9
Or see this region's nucleotide sequence