Strain Fitness in Marinobacter adhaerens HP15 around HP15_49

Experiment: L-Proline as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_47 and HP15_48 overlap by 4 nucleotidesHP15_48 and HP15_49 overlap by 4 nucleotidesHP15_49 and HP15_50 are separated by 179 nucleotides HP15_47: HP15_47 - fumarylacetoacetate (FAA) hydrolase, at 51,081 to 51,947 _47 HP15_48: HP15_48 - 3-hydroxybutyryl-CoA dehydrogenase, at 51,944 to 52,849 _48 HP15_49: HP15_49 - acetyl-CoA acetyltransferase, at 52,846 to 54,021 _49 HP15_50: HP15_50 - hypothetical protein, at 54,201 to 54,554 _50 Position (kb) 52 53 54 55Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 51.860 kb on + strand, within HP15_47at 51.976 kb on - strandat 52.028 kb on + strandat 52.030 kb on + strandat 52.051 kb on - strand, within HP15_48at 52.056 kb on + strand, within HP15_48at 52.084 kb on - strand, within HP15_48at 52.223 kb on - strand, within HP15_48at 52.311 kb on - strand, within HP15_48at 52.396 kb on + strand, within HP15_48at 52.409 kb on + strand, within HP15_48at 52.444 kb on - strand, within HP15_48at 52.455 kb on + strand, within HP15_48at 52.455 kb on + strand, within HP15_48at 52.465 kb on + strand, within HP15_48at 52.465 kb on + strand, within HP15_48at 52.538 kb on + strand, within HP15_48at 52.561 kb on - strand, within HP15_48at 52.574 kb on + strand, within HP15_48at 52.624 kb on - strand, within HP15_48at 52.627 kb on + strand, within HP15_48at 52.667 kb on + strand, within HP15_48at 52.676 kb on - strand, within HP15_48at 52.698 kb on + strand, within HP15_48at 52.779 kb on + strandat 52.793 kb on - strandat 52.834 kb on + strandat 52.841 kb on - strandat 52.913 kb on + strandat 52.919 kb on + strandat 52.999 kb on + strand, within HP15_49at 53.058 kb on + strand, within HP15_49at 53.059 kb on - strand, within HP15_49at 53.059 kb on - strand, within HP15_49at 53.059 kb on - strand, within HP15_49at 53.078 kb on + strand, within HP15_49at 53.081 kb on - strand, within HP15_49at 53.128 kb on + strand, within HP15_49at 53.128 kb on + strand, within HP15_49at 53.128 kb on + strand, within HP15_49at 53.128 kb on + strand, within HP15_49at 53.136 kb on - strand, within HP15_49at 53.136 kb on - strand, within HP15_49at 53.136 kb on - strand, within HP15_49at 53.136 kb on - strand, within HP15_49at 53.136 kb on - strand, within HP15_49at 53.136 kb on - strand, within HP15_49at 53.233 kb on - strand, within HP15_49at 53.237 kb on + strand, within HP15_49at 53.297 kb on - strand, within HP15_49at 53.338 kb on - strand, within HP15_49at 53.736 kb on - strand, within HP15_49at 53.736 kb on - strand, within HP15_49at 53.819 kb on - strand, within HP15_49at 53.824 kb on - strand, within HP15_49at 53.824 kb on - strand, within HP15_49at 53.826 kb on + strand, within HP15_49at 53.826 kb on + strand, within HP15_49at 53.872 kb on + strand, within HP15_49at 53.878 kb on + strand, within HP15_49at 53.883 kb on + strand, within HP15_49at 53.884 kb on + strand, within HP15_49at 53.885 kb on - strand, within HP15_49at 53.999 kb on + strandat 54.036 kb on + strandat 54.103 kb on + strandat 54.103 kb on + strandat 54.125 kb on - strandat 54.158 kb on + strandat 54.161 kb on - strandat 54.207 kb on + strandat 54.207 kb on + strandat 54.215 kb on - strandat 54.257 kb on - strand, within HP15_50at 54.292 kb on - strand, within HP15_50at 54.332 kb on + strand, within HP15_50at 54.332 kb on + strand, within HP15_50at 54.341 kb on - strand, within HP15_50at 54.464 kb on + strand, within HP15_50at 54.500 kb on - strand, within HP15_50at 54.545 kb on + strandat 54.553 kb on - strandat 54.553 kb on - strandat 54.558 kb on + strandat 54.566 kb on - strandat 54.580 kb on + strandat 54.580 kb on + strandat 54.635 kb on + strandat 54.635 kb on + strandat 54.643 kb on - strandat 54.644 kb on - strandat 54.649 kb on - strandat 54.697 kb on - strandat 54.697 kb on - strandat 54.740 kb on - strandat 54.741 kb on + strandat 54.772 kb on + strandat 54.811 kb on + strandat 54.824 kb on - strandat 54.834 kb on - strandat 54.851 kb on + strandat 54.857 kb on + strandat 54.879 kb on + strandat 54.879 kb on + strandat 54.879 kb on + strandat 54.884 kb on + strandat 54.884 kb on + strandat 54.887 kb on - strandat 54.887 kb on - strandat 54.892 kb on - strandat 54.892 kb on - strandat 54.892 kb on - strandat 54.896 kb on + strandat 54.899 kb on - strandat 54.899 kb on - strandat 54.904 kb on - strandat 54.904 kb on - strandat 54.904 kb on - strandat 54.915 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline as (N)
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51,860 + HP15_47 0.90 +0.5
51,976 - +0.2
52,028 + -1.9
52,030 + +0.3
52,051 - HP15_48 0.12 +0.1
52,056 + HP15_48 0.12 +1.1
52,084 - HP15_48 0.15 +0.7
52,223 - HP15_48 0.31 -0.6
52,311 - HP15_48 0.41 -0.3
52,396 + HP15_48 0.50 -0.5
52,409 + HP15_48 0.51 +0.2
52,444 - HP15_48 0.55 +1.4
52,455 + HP15_48 0.56 +0.3
52,455 + HP15_48 0.56 -0.6
52,465 + HP15_48 0.58 +1.0
52,465 + HP15_48 0.58 -0.9
52,538 + HP15_48 0.66 +0.9
52,561 - HP15_48 0.68 +1.4
52,574 + HP15_48 0.70 +0.3
52,624 - HP15_48 0.75 -0.2
52,627 + HP15_48 0.75 +0.8
52,667 + HP15_48 0.80 +1.0
52,676 - HP15_48 0.81 +1.1
52,698 + HP15_48 0.83 +0.3
52,779 + -1.2
52,793 - +0.7
52,834 + -1.1
52,841 - -0.8
52,913 + +1.1
52,919 + +0.5
52,999 + HP15_49 0.13 +1.1
53,058 + HP15_49 0.18 -0.6
53,059 - HP15_49 0.18 +1.3
53,059 - HP15_49 0.18 +0.2
53,059 - HP15_49 0.18 +0.9
53,078 + HP15_49 0.20 +1.0
53,081 - HP15_49 0.20 +1.1
53,128 + HP15_49 0.24 -0.6
53,128 + HP15_49 0.24 -0.3
53,128 + HP15_49 0.24 +1.2
53,128 + HP15_49 0.24 +1.2
53,136 - HP15_49 0.25 +0.5
53,136 - HP15_49 0.25 +0.9
53,136 - HP15_49 0.25 +1.4
53,136 - HP15_49 0.25 -0.0
53,136 - HP15_49 0.25 +4.3
53,136 - HP15_49 0.25 +0.0
53,233 - HP15_49 0.33 -0.6
53,237 + HP15_49 0.33 +0.4
53,297 - HP15_49 0.38 -0.3
53,338 - HP15_49 0.42 -0.9
53,736 - HP15_49 0.76 +1.3
53,736 - HP15_49 0.76 -0.0
53,819 - HP15_49 0.83 -2.1
53,824 - HP15_49 0.83 +1.1
53,824 - HP15_49 0.83 -0.1
53,826 + HP15_49 0.83 -0.5
53,826 + HP15_49 0.83 -0.7
53,872 + HP15_49 0.87 +0.9
53,878 + HP15_49 0.88 +1.0
53,883 + HP15_49 0.88 -1.8
53,884 + HP15_49 0.88 +0.2
53,885 - HP15_49 0.88 +2.1
53,999 + -0.4
54,036 + +0.7
54,103 + -0.1
54,103 + -1.7
54,125 - +0.6
54,158 + +0.3
54,161 - +0.6
54,207 + -0.5
54,207 + +0.6
54,215 - -0.4
54,257 - HP15_50 0.16 -0.3
54,292 - HP15_50 0.26 +0.5
54,332 + HP15_50 0.37 -0.2
54,332 + HP15_50 0.37 +1.8
54,341 - HP15_50 0.40 -0.1
54,464 + HP15_50 0.74 +0.8
54,500 - HP15_50 0.84 +1.0
54,545 + -0.8
54,553 - -0.0
54,553 - -0.3
54,558 + -0.3
54,566 - -0.6
54,580 + +0.0
54,580 + +1.0
54,635 + -0.0
54,635 + +0.0
54,643 - -0.0
54,644 - -0.0
54,649 - -1.2
54,697 - +1.5
54,697 - -0.0
54,740 - -0.0
54,741 + +2.7
54,772 + +0.7
54,811 + -0.4
54,824 - +1.1
54,834 - -0.3
54,851 + +1.2
54,857 + +0.8
54,879 + -0.6
54,879 + -0.9
54,879 + +1.3
54,884 + +1.8
54,884 + -0.6
54,887 - -0.7
54,887 - +0.9
54,892 - -0.2
54,892 - +1.3
54,892 - +0.5
54,896 + +0.7
54,899 - -0.8
54,899 - -0.3
54,904 - -0.6
54,904 - +0.3
54,904 - +0.0
54,915 - -1.3

Or see this region's nucleotide sequence