Experiment: L-Proline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_454 and HP15_455 overlap by 1 nucleotides HP15_455 and HP15_456 are separated by 202 nucleotides HP15_456 and HP15_457 overlap by 7 nucleotides
HP15_454: HP15_454 - nucleoside diphosphate pyrophosphatase, at 459,512 to 460,129
_454
HP15_455: HP15_455 - protein containing DUF1249, at 460,129 to 460,614
_455
HP15_456: HP15_456 - phosphohydrolase, at 460,817 to 461,623
_456
HP15_457: HP15_457 - 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase, at 461,617 to 463,896
_457
Position (kb) 460
461
462 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 459.855 kb on - strand, within HP15_454 at 459.933 kb on - strand, within HP15_454 at 459.991 kb on + strand, within HP15_454 at 460.084 kb on - strand at 460.086 kb on + strand at 460.179 kb on + strand, within HP15_455 at 460.187 kb on - strand, within HP15_455 at 460.637 kb on - strand at 460.701 kb on + strand at 460.710 kb on - strand at 461.670 kb on - strand at 461.670 kb on - strand at 461.685 kb on - strand at 461.703 kb on - strand at 461.735 kb on + strand at 461.793 kb on - strand at 461.803 kb on + strand at 461.809 kb on + strand at 461.817 kb on - strand at 461.838 kb on + strand at 461.869 kb on + strand, within HP15_457 at 462.125 kb on - strand, within HP15_457 at 462.156 kb on + strand, within HP15_457 at 462.156 kb on + strand, within HP15_457 at 462.287 kb on + strand, within HP15_457 at 462.325 kb on + strand, within HP15_457 at 462.360 kb on - strand, within HP15_457 at 462.362 kb on + strand, within HP15_457 at 462.370 kb on - strand, within HP15_457 at 462.479 kb on + strand, within HP15_457 at 462.555 kb on - strand, within HP15_457
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline as (N) remove 459,855 - HP15_454 0.56 +0.4 459,933 - HP15_454 0.68 -1.4 459,991 + HP15_454 0.78 -0.0 460,084 - +0.7 460,086 + -0.7 460,179 + HP15_455 0.10 +0.8 460,187 - HP15_455 0.12 -0.3 460,637 - +0.6 460,701 + -0.6 460,710 - -0.1 461,670 - -1.8 461,670 - -1.2 461,685 - -1.9 461,703 - -1.0 461,735 + -2.3 461,793 - -1.8 461,803 + -2.1 461,809 + -1.7 461,817 - -3.1 461,838 + -1.0 461,869 + HP15_457 0.11 -1.1 462,125 - HP15_457 0.22 -1.6 462,156 + HP15_457 0.24 -0.8 462,156 + HP15_457 0.24 +0.7 462,287 + HP15_457 0.29 -1.5 462,325 + HP15_457 0.31 -1.9 462,360 - HP15_457 0.33 -1.2 462,362 + HP15_457 0.33 +0.4 462,370 - HP15_457 0.33 -2.1 462,479 + HP15_457 0.38 -2.6 462,555 - HP15_457 0.41 -2.4
Or see this region's nucleotide sequence