Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04170

Experiment: m.b. Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04160 and PGA1_c04170 are separated by 65 nucleotidesPGA1_c04170 and PGA1_c04180 are separated by 176 nucleotides PGA1_c04160: PGA1_c04160 - putative crotonobetaine/carnitine-CoA ligase, at 403,269 to 404,774 _c04160 PGA1_c04170: PGA1_c04170 - ribulose-phosphate 3-epimerase Rpe, at 404,840 to 405,529 _c04170 PGA1_c04180: PGA1_c04180 - phosphonates import ATP-binding protein PhnC, at 405,706 to 406,524 _c04180 Position (kb) 404 405 406Strain fitness (log2 ratio) -2 -1 0 1at 403.842 kb on + strand, within PGA1_c04160at 403.847 kb on + strand, within PGA1_c04160at 403.847 kb on + strand, within PGA1_c04160at 403.855 kb on - strand, within PGA1_c04160at 403.855 kb on - strand, within PGA1_c04160at 403.855 kb on - strand, within PGA1_c04160at 403.857 kb on + strand, within PGA1_c04160at 403.865 kb on - strand, within PGA1_c04160at 403.875 kb on + strand, within PGA1_c04160at 403.883 kb on - strand, within PGA1_c04160at 403.892 kb on + strand, within PGA1_c04160at 403.926 kb on - strand, within PGA1_c04160at 403.943 kb on + strand, within PGA1_c04160at 403.943 kb on + strand, within PGA1_c04160at 403.951 kb on - strand, within PGA1_c04160at 403.976 kb on + strand, within PGA1_c04160at 403.989 kb on - strand, within PGA1_c04160at 403.991 kb on + strand, within PGA1_c04160at 404.047 kb on + strand, within PGA1_c04160at 404.054 kb on - strand, within PGA1_c04160at 404.055 kb on + strand, within PGA1_c04160at 404.087 kb on + strand, within PGA1_c04160at 404.100 kb on - strand, within PGA1_c04160at 404.129 kb on - strand, within PGA1_c04160at 404.189 kb on + strand, within PGA1_c04160at 404.194 kb on + strand, within PGA1_c04160at 404.209 kb on + strand, within PGA1_c04160at 404.244 kb on - strand, within PGA1_c04160at 404.251 kb on + strand, within PGA1_c04160at 404.251 kb on + strand, within PGA1_c04160at 404.251 kb on + strand, within PGA1_c04160at 404.251 kb on + strand, within PGA1_c04160at 404.253 kb on + strand, within PGA1_c04160at 404.254 kb on - strand, within PGA1_c04160at 404.259 kb on - strand, within PGA1_c04160at 404.259 kb on - strand, within PGA1_c04160at 404.276 kb on - strand, within PGA1_c04160at 404.301 kb on + strand, within PGA1_c04160at 404.301 kb on + strand, within PGA1_c04160at 404.370 kb on + strand, within PGA1_c04160at 404.372 kb on + strand, within PGA1_c04160at 404.589 kb on + strand, within PGA1_c04160at 404.611 kb on + strand, within PGA1_c04160at 404.659 kb on - strandat 404.664 kb on + strandat 404.696 kb on + strandat 404.754 kb on + strandat 404.822 kb on - strandat 405.587 kb on - strandat 405.619 kb on + strandat 405.670 kb on + strandat 405.670 kb on + strandat 405.678 kb on - strandat 405.678 kb on - strandat 405.678 kb on - strandat 405.680 kb on + strandat 405.680 kb on + strandat 405.688 kb on - strandat 405.688 kb on - strandat 405.701 kb on + strandat 405.701 kb on + strandat 405.708 kb on - strandat 405.756 kb on + strandat 405.756 kb on + strandat 405.799 kb on + strand, within PGA1_c04180at 405.861 kb on + strand, within PGA1_c04180at 405.890 kb on + strand, within PGA1_c04180at 405.898 kb on - strand, within PGA1_c04180at 405.898 kb on - strand, within PGA1_c04180at 405.899 kb on + strand, within PGA1_c04180at 405.899 kb on + strand, within PGA1_c04180at 405.914 kb on + strand, within PGA1_c04180at 405.914 kb on + strand, within PGA1_c04180at 405.961 kb on - strand, within PGA1_c04180at 405.961 kb on - strand, within PGA1_c04180at 405.963 kb on + strand, within PGA1_c04180at 405.971 kb on - strand, within PGA1_c04180at 406.003 kb on - strand, within PGA1_c04180at 406.012 kb on + strand, within PGA1_c04180at 406.044 kb on + strand, within PGA1_c04180at 406.044 kb on + strand, within PGA1_c04180at 406.044 kb on + strand, within PGA1_c04180at 406.106 kb on - strand, within PGA1_c04180at 406.140 kb on + strand, within PGA1_c04180at 406.148 kb on - strand, within PGA1_c04180at 406.150 kb on - strand, within PGA1_c04180at 406.155 kb on - strand, within PGA1_c04180at 406.340 kb on - strand, within PGA1_c04180at 406.398 kb on + strand, within PGA1_c04180at 406.453 kb on + strandat 406.468 kb on - strandat 406.485 kb on - strandat 406.485 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.625 mM
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403,842 + PGA1_c04160 0.38 +0.3
403,847 + PGA1_c04160 0.38 -0.3
403,847 + PGA1_c04160 0.38 -1.4
403,855 - PGA1_c04160 0.39 +0.9
403,855 - PGA1_c04160 0.39 +0.3
403,855 - PGA1_c04160 0.39 +0.1
403,857 + PGA1_c04160 0.39 -0.2
403,865 - PGA1_c04160 0.40 -0.1
403,875 + PGA1_c04160 0.40 +0.5
403,883 - PGA1_c04160 0.41 -0.3
403,892 + PGA1_c04160 0.41 +0.9
403,926 - PGA1_c04160 0.44 +1.0
403,943 + PGA1_c04160 0.45 +0.9
403,943 + PGA1_c04160 0.45 +0.7
403,951 - PGA1_c04160 0.45 +1.2
403,976 + PGA1_c04160 0.47 +1.1
403,989 - PGA1_c04160 0.48 +0.7
403,991 + PGA1_c04160 0.48 +0.9
404,047 + PGA1_c04160 0.52 +0.5
404,054 - PGA1_c04160 0.52 +0.1
404,055 + PGA1_c04160 0.52 -0.1
404,087 + PGA1_c04160 0.54 +0.7
404,100 - PGA1_c04160 0.55 -0.7
404,129 - PGA1_c04160 0.57 +0.2
404,189 + PGA1_c04160 0.61 -1.4
404,194 + PGA1_c04160 0.61 +0.5
404,209 + PGA1_c04160 0.62 -1.1
404,244 - PGA1_c04160 0.65 +0.2
404,251 + PGA1_c04160 0.65 -0.2
404,251 + PGA1_c04160 0.65 -0.7
404,251 + PGA1_c04160 0.65 +0.6
404,251 + PGA1_c04160 0.65 -1.1
404,253 + PGA1_c04160 0.65 +1.1
404,254 - PGA1_c04160 0.65 +0.2
404,259 - PGA1_c04160 0.66 -1.4
404,259 - PGA1_c04160 0.66 -1.1
404,276 - PGA1_c04160 0.67 +0.6
404,301 + PGA1_c04160 0.69 +0.6
404,301 + PGA1_c04160 0.69 -0.5
404,370 + PGA1_c04160 0.73 +1.1
404,372 + PGA1_c04160 0.73 +1.3
404,589 + PGA1_c04160 0.88 -1.1
404,611 + PGA1_c04160 0.89 +0.5
404,659 - +0.3
404,664 + -0.1
404,696 + +0.9
404,754 + +0.3
404,822 - +1.3
405,587 - -0.9
405,619 + -2.4
405,670 + +1.1
405,670 + -0.8
405,678 - +0.1
405,678 - -1.9
405,678 - -0.2
405,680 + +0.9
405,680 + -0.4
405,688 - +0.2
405,688 - -0.1
405,701 + +1.5
405,701 + +0.5
405,708 - +0.6
405,756 + -0.1
405,756 + +0.7
405,799 + PGA1_c04180 0.11 +0.3
405,861 + PGA1_c04180 0.19 +0.5
405,890 + PGA1_c04180 0.22 -0.4
405,898 - PGA1_c04180 0.23 -1.2
405,898 - PGA1_c04180 0.23 -0.5
405,899 + PGA1_c04180 0.24 +0.3
405,899 + PGA1_c04180 0.24 -0.9
405,914 + PGA1_c04180 0.25 -0.1
405,914 + PGA1_c04180 0.25 +0.6
405,961 - PGA1_c04180 0.31 +0.3
405,961 - PGA1_c04180 0.31 -0.4
405,963 + PGA1_c04180 0.31 +0.6
405,971 - PGA1_c04180 0.32 +1.2
406,003 - PGA1_c04180 0.36 -1.1
406,012 + PGA1_c04180 0.37 -0.3
406,044 + PGA1_c04180 0.41 +0.3
406,044 + PGA1_c04180 0.41 +0.1
406,044 + PGA1_c04180 0.41 +0.3
406,106 - PGA1_c04180 0.49 -0.4
406,140 + PGA1_c04180 0.53 +0.4
406,148 - PGA1_c04180 0.54 -0.1
406,150 - PGA1_c04180 0.54 -1.1
406,155 - PGA1_c04180 0.55 -0.4
406,340 - PGA1_c04180 0.77 -1.4
406,398 + PGA1_c04180 0.84 -0.6
406,453 + -0.1
406,468 - -0.1
406,485 - +0.5
406,485 - -1.9

Or see this region's nucleotide sequence