Experiment: L-Proline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3831 and HP15_3832 are separated by 87 nucleotides HP15_3832 and HP15_3833 are separated by 25 nucleotides HP15_3833 and HP15_3834 are separated by 151 nucleotides
HP15_3831: HP15_3831 - transcriptional regulator, TetR family protein, at 4,058,380 to 4,058,985
_3831
HP15_3832: HP15_3832 - hypothetical protein, at 4,059,073 to 4,059,657
_3832
HP15_3833: HP15_3833 - nitrous-oxide reductase transcriptional activator NosR, at 4,059,683 to 4,061,749
_3833
HP15_3834: HP15_3834 - glutathione S-transferase YghU, at 4,061,901 to 4,062,773
_3834
Position (kb)
4059
4060
4061
4062 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4058.736 kb on - strand, within HP15_3831 at 4058.759 kb on + strand, within HP15_3831 at 4058.788 kb on + strand, within HP15_3831 at 4058.793 kb on + strand, within HP15_3831 at 4058.892 kb on + strand, within HP15_3831 at 4059.155 kb on - strand, within HP15_3832 at 4059.270 kb on - strand, within HP15_3832 at 4059.275 kb on + strand, within HP15_3832 at 4059.658 kb on + strand at 4059.886 kb on + strand at 4059.887 kb on - strand at 4059.894 kb on - strand, within HP15_3833 at 4059.894 kb on - strand, within HP15_3833 at 4060.299 kb on - strand, within HP15_3833 at 4060.315 kb on + strand, within HP15_3833 at 4060.323 kb on - strand, within HP15_3833 at 4060.381 kb on + strand, within HP15_3833 at 4060.383 kb on + strand, within HP15_3833 at 4060.391 kb on - strand, within HP15_3833 at 4060.391 kb on - strand, within HP15_3833 at 4060.438 kb on + strand, within HP15_3833 at 4060.594 kb on + strand, within HP15_3833 at 4060.602 kb on - strand, within HP15_3833 at 4060.650 kb on - strand, within HP15_3833 at 4060.708 kb on + strand, within HP15_3833 at 4060.716 kb on - strand, within HP15_3833 at 4060.716 kb on - strand, within HP15_3833 at 4060.716 kb on - strand, within HP15_3833 at 4060.745 kb on + strand, within HP15_3833 at 4060.772 kb on + strand, within HP15_3833 at 4060.785 kb on - strand, within HP15_3833 at 4060.837 kb on + strand, within HP15_3833 at 4060.845 kb on - strand, within HP15_3833 at 4060.879 kb on + strand, within HP15_3833 at 4060.887 kb on - strand, within HP15_3833 at 4060.927 kb on + strand, within HP15_3833 at 4060.932 kb on - strand, within HP15_3833 at 4060.946 kb on - strand, within HP15_3833 at 4061.085 kb on + strand, within HP15_3833 at 4061.103 kb on - strand, within HP15_3833 at 4061.130 kb on + strand, within HP15_3833 at 4061.185 kb on + strand, within HP15_3833 at 4061.257 kb on - strand, within HP15_3833 at 4061.291 kb on - strand, within HP15_3833 at 4061.291 kb on - strand, within HP15_3833 at 4061.345 kb on + strand, within HP15_3833 at 4061.394 kb on - strand, within HP15_3833 at 4061.394 kb on - strand, within HP15_3833 at 4061.405 kb on + strand, within HP15_3833 at 4061.428 kb on - strand, within HP15_3833 at 4061.478 kb on - strand, within HP15_3833 at 4061.485 kb on - strand, within HP15_3833 at 4061.501 kb on - strand, within HP15_3833 at 4061.736 kb on - strand at 4061.741 kb on - strand at 4061.763 kb on + strand at 4061.787 kb on + strand at 4061.793 kb on + strand at 4061.795 kb on - strand at 4061.801 kb on - strand at 4061.997 kb on + strand, within HP15_3834 at 4062.046 kb on - strand, within HP15_3834 at 4062.046 kb on - strand, within HP15_3834 at 4062.155 kb on - strand, within HP15_3834 at 4062.172 kb on + strand, within HP15_3834 at 4062.190 kb on - strand, within HP15_3834 at 4062.231 kb on - strand, within HP15_3834 at 4062.266 kb on + strand, within HP15_3834 at 4062.274 kb on - strand, within HP15_3834 at 4062.403 kb on + strand, within HP15_3834 at 4062.405 kb on + strand, within HP15_3834 at 4062.466 kb on - strand, within HP15_3834 at 4062.480 kb on - strand, within HP15_3834 at 4062.483 kb on + strand, within HP15_3834 at 4062.610 kb on - strand, within HP15_3834 at 4062.633 kb on - strand, within HP15_3834 at 4062.666 kb on - strand, within HP15_3834 at 4062.680 kb on + strand, within HP15_3834 at 4062.680 kb on + strand, within HP15_3834 at 4062.680 kb on + strand, within HP15_3834 at 4062.680 kb on + strand, within HP15_3834 at 4062.688 kb on - strand at 4062.688 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline as (N) remove 4,058,736 - HP15_3831 0.59 +0.8 4,058,759 + HP15_3831 0.63 +0.8 4,058,788 + HP15_3831 0.67 -0.2 4,058,793 + HP15_3831 0.68 -0.5 4,058,892 + HP15_3831 0.84 -0.2 4,059,155 - HP15_3832 0.14 -0.3 4,059,270 - HP15_3832 0.34 -0.1 4,059,275 + HP15_3832 0.35 +1.2 4,059,658 + -1.7 4,059,886 + -1.3 4,059,887 - +1.0 4,059,894 - HP15_3833 0.10 -1.1 4,059,894 - HP15_3833 0.10 -0.8 4,060,299 - HP15_3833 0.30 +0.7 4,060,315 + HP15_3833 0.31 +2.0 4,060,323 - HP15_3833 0.31 +0.9 4,060,381 + HP15_3833 0.34 -0.8 4,060,383 + HP15_3833 0.34 -1.0 4,060,391 - HP15_3833 0.34 -0.1 4,060,391 - HP15_3833 0.34 -2.6 4,060,438 + HP15_3833 0.37 +0.5 4,060,594 + HP15_3833 0.44 -0.1 4,060,602 - HP15_3833 0.44 -0.4 4,060,650 - HP15_3833 0.47 +1.1 4,060,708 + HP15_3833 0.50 +0.0 4,060,716 - HP15_3833 0.50 -0.0 4,060,716 - HP15_3833 0.50 -0.2 4,060,716 - HP15_3833 0.50 +0.8 4,060,745 + HP15_3833 0.51 -0.3 4,060,772 + HP15_3833 0.53 +0.2 4,060,785 - HP15_3833 0.53 +1.7 4,060,837 + HP15_3833 0.56 -0.6 4,060,845 - HP15_3833 0.56 -0.2 4,060,879 + HP15_3833 0.58 -0.3 4,060,887 - HP15_3833 0.58 +0.7 4,060,927 + HP15_3833 0.60 -1.0 4,060,932 - HP15_3833 0.60 -1.0 4,060,946 - HP15_3833 0.61 +0.4 4,061,085 + HP15_3833 0.68 -0.2 4,061,103 - HP15_3833 0.69 -0.6 4,061,130 + HP15_3833 0.70 +0.9 4,061,185 + HP15_3833 0.73 -0.7 4,061,257 - HP15_3833 0.76 +0.4 4,061,291 - HP15_3833 0.78 -0.5 4,061,291 - HP15_3833 0.78 +0.2 4,061,345 + HP15_3833 0.80 -0.1 4,061,394 - HP15_3833 0.83 +0.0 4,061,394 - HP15_3833 0.83 -0.6 4,061,405 + HP15_3833 0.83 -0.3 4,061,428 - HP15_3833 0.84 +0.2 4,061,478 - HP15_3833 0.87 +0.1 4,061,485 - HP15_3833 0.87 -1.0 4,061,501 - HP15_3833 0.88 -0.2 4,061,736 - -0.9 4,061,741 - +0.1 4,061,763 + -0.3 4,061,787 + -1.0 4,061,793 + +0.0 4,061,795 - -0.3 4,061,801 - +1.2 4,061,997 + HP15_3834 0.11 -1.1 4,062,046 - HP15_3834 0.17 +0.6 4,062,046 - HP15_3834 0.17 -0.4 4,062,155 - HP15_3834 0.29 -0.3 4,062,172 + HP15_3834 0.31 +1.1 4,062,190 - HP15_3834 0.33 +1.6 4,062,231 - HP15_3834 0.38 +1.0 4,062,266 + HP15_3834 0.42 +0.1 4,062,274 - HP15_3834 0.43 +0.9 4,062,403 + HP15_3834 0.58 -0.6 4,062,405 + HP15_3834 0.58 +1.2 4,062,466 - HP15_3834 0.65 +0.7 4,062,480 - HP15_3834 0.66 +0.7 4,062,483 + HP15_3834 0.67 +0.3 4,062,610 - HP15_3834 0.81 +0.6 4,062,633 - HP15_3834 0.84 -0.4 4,062,666 - HP15_3834 0.88 -1.6 4,062,680 + HP15_3834 0.89 -0.1 4,062,680 + HP15_3834 0.89 +0.1 4,062,680 + HP15_3834 0.89 +0.7 4,062,680 + HP15_3834 0.89 -0.5 4,062,688 - +1.5 4,062,688 - -0.0
Or see this region's nucleotide sequence