Strain Fitness in Marinobacter adhaerens HP15 around HP15_3833

Experiment: L-Proline as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3831 and HP15_3832 are separated by 87 nucleotidesHP15_3832 and HP15_3833 are separated by 25 nucleotidesHP15_3833 and HP15_3834 are separated by 151 nucleotides HP15_3831: HP15_3831 - transcriptional regulator, TetR family protein, at 4,058,380 to 4,058,985 _3831 HP15_3832: HP15_3832 - hypothetical protein, at 4,059,073 to 4,059,657 _3832 HP15_3833: HP15_3833 - nitrous-oxide reductase transcriptional activator NosR, at 4,059,683 to 4,061,749 _3833 HP15_3834: HP15_3834 - glutathione S-transferase YghU, at 4,061,901 to 4,062,773 _3834 Position (kb) 4059 4060 4061 4062Strain fitness (log2 ratio) -2 -1 0 1 2at 4058.736 kb on - strand, within HP15_3831at 4058.759 kb on + strand, within HP15_3831at 4058.788 kb on + strand, within HP15_3831at 4058.793 kb on + strand, within HP15_3831at 4058.892 kb on + strand, within HP15_3831at 4059.155 kb on - strand, within HP15_3832at 4059.270 kb on - strand, within HP15_3832at 4059.275 kb on + strand, within HP15_3832at 4059.658 kb on + strandat 4059.886 kb on + strandat 4059.887 kb on - strandat 4059.894 kb on - strand, within HP15_3833at 4059.894 kb on - strand, within HP15_3833at 4060.299 kb on - strand, within HP15_3833at 4060.315 kb on + strand, within HP15_3833at 4060.323 kb on - strand, within HP15_3833at 4060.381 kb on + strand, within HP15_3833at 4060.383 kb on + strand, within HP15_3833at 4060.391 kb on - strand, within HP15_3833at 4060.391 kb on - strand, within HP15_3833at 4060.438 kb on + strand, within HP15_3833at 4060.594 kb on + strand, within HP15_3833at 4060.602 kb on - strand, within HP15_3833at 4060.650 kb on - strand, within HP15_3833at 4060.708 kb on + strand, within HP15_3833at 4060.716 kb on - strand, within HP15_3833at 4060.716 kb on - strand, within HP15_3833at 4060.716 kb on - strand, within HP15_3833at 4060.745 kb on + strand, within HP15_3833at 4060.772 kb on + strand, within HP15_3833at 4060.785 kb on - strand, within HP15_3833at 4060.837 kb on + strand, within HP15_3833at 4060.845 kb on - strand, within HP15_3833at 4060.879 kb on + strand, within HP15_3833at 4060.887 kb on - strand, within HP15_3833at 4060.927 kb on + strand, within HP15_3833at 4060.932 kb on - strand, within HP15_3833at 4060.946 kb on - strand, within HP15_3833at 4061.085 kb on + strand, within HP15_3833at 4061.103 kb on - strand, within HP15_3833at 4061.130 kb on + strand, within HP15_3833at 4061.185 kb on + strand, within HP15_3833at 4061.257 kb on - strand, within HP15_3833at 4061.291 kb on - strand, within HP15_3833at 4061.291 kb on - strand, within HP15_3833at 4061.345 kb on + strand, within HP15_3833at 4061.394 kb on - strand, within HP15_3833at 4061.394 kb on - strand, within HP15_3833at 4061.405 kb on + strand, within HP15_3833at 4061.428 kb on - strand, within HP15_3833at 4061.478 kb on - strand, within HP15_3833at 4061.485 kb on - strand, within HP15_3833at 4061.501 kb on - strand, within HP15_3833at 4061.736 kb on - strandat 4061.741 kb on - strandat 4061.763 kb on + strandat 4061.787 kb on + strandat 4061.793 kb on + strandat 4061.795 kb on - strandat 4061.801 kb on - strandat 4061.997 kb on + strand, within HP15_3834at 4062.046 kb on - strand, within HP15_3834at 4062.046 kb on - strand, within HP15_3834at 4062.155 kb on - strand, within HP15_3834at 4062.172 kb on + strand, within HP15_3834at 4062.190 kb on - strand, within HP15_3834at 4062.231 kb on - strand, within HP15_3834at 4062.266 kb on + strand, within HP15_3834at 4062.274 kb on - strand, within HP15_3834at 4062.403 kb on + strand, within HP15_3834at 4062.405 kb on + strand, within HP15_3834at 4062.466 kb on - strand, within HP15_3834at 4062.480 kb on - strand, within HP15_3834at 4062.483 kb on + strand, within HP15_3834at 4062.610 kb on - strand, within HP15_3834at 4062.633 kb on - strand, within HP15_3834at 4062.666 kb on - strand, within HP15_3834at 4062.680 kb on + strand, within HP15_3834at 4062.680 kb on + strand, within HP15_3834at 4062.680 kb on + strand, within HP15_3834at 4062.680 kb on + strand, within HP15_3834at 4062.688 kb on - strandat 4062.688 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline as (N)
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4,058,736 - HP15_3831 0.59 +0.8
4,058,759 + HP15_3831 0.63 +0.8
4,058,788 + HP15_3831 0.67 -0.2
4,058,793 + HP15_3831 0.68 -0.5
4,058,892 + HP15_3831 0.84 -0.2
4,059,155 - HP15_3832 0.14 -0.3
4,059,270 - HP15_3832 0.34 -0.1
4,059,275 + HP15_3832 0.35 +1.2
4,059,658 + -1.7
4,059,886 + -1.3
4,059,887 - +1.0
4,059,894 - HP15_3833 0.10 -1.1
4,059,894 - HP15_3833 0.10 -0.8
4,060,299 - HP15_3833 0.30 +0.7
4,060,315 + HP15_3833 0.31 +2.0
4,060,323 - HP15_3833 0.31 +0.9
4,060,381 + HP15_3833 0.34 -0.8
4,060,383 + HP15_3833 0.34 -1.0
4,060,391 - HP15_3833 0.34 -0.1
4,060,391 - HP15_3833 0.34 -2.6
4,060,438 + HP15_3833 0.37 +0.5
4,060,594 + HP15_3833 0.44 -0.1
4,060,602 - HP15_3833 0.44 -0.4
4,060,650 - HP15_3833 0.47 +1.1
4,060,708 + HP15_3833 0.50 +0.0
4,060,716 - HP15_3833 0.50 -0.0
4,060,716 - HP15_3833 0.50 -0.2
4,060,716 - HP15_3833 0.50 +0.8
4,060,745 + HP15_3833 0.51 -0.3
4,060,772 + HP15_3833 0.53 +0.2
4,060,785 - HP15_3833 0.53 +1.7
4,060,837 + HP15_3833 0.56 -0.6
4,060,845 - HP15_3833 0.56 -0.2
4,060,879 + HP15_3833 0.58 -0.3
4,060,887 - HP15_3833 0.58 +0.7
4,060,927 + HP15_3833 0.60 -1.0
4,060,932 - HP15_3833 0.60 -1.0
4,060,946 - HP15_3833 0.61 +0.4
4,061,085 + HP15_3833 0.68 -0.2
4,061,103 - HP15_3833 0.69 -0.6
4,061,130 + HP15_3833 0.70 +0.9
4,061,185 + HP15_3833 0.73 -0.7
4,061,257 - HP15_3833 0.76 +0.4
4,061,291 - HP15_3833 0.78 -0.5
4,061,291 - HP15_3833 0.78 +0.2
4,061,345 + HP15_3833 0.80 -0.1
4,061,394 - HP15_3833 0.83 +0.0
4,061,394 - HP15_3833 0.83 -0.6
4,061,405 + HP15_3833 0.83 -0.3
4,061,428 - HP15_3833 0.84 +0.2
4,061,478 - HP15_3833 0.87 +0.1
4,061,485 - HP15_3833 0.87 -1.0
4,061,501 - HP15_3833 0.88 -0.2
4,061,736 - -0.9
4,061,741 - +0.1
4,061,763 + -0.3
4,061,787 + -1.0
4,061,793 + +0.0
4,061,795 - -0.3
4,061,801 - +1.2
4,061,997 + HP15_3834 0.11 -1.1
4,062,046 - HP15_3834 0.17 +0.6
4,062,046 - HP15_3834 0.17 -0.4
4,062,155 - HP15_3834 0.29 -0.3
4,062,172 + HP15_3834 0.31 +1.1
4,062,190 - HP15_3834 0.33 +1.6
4,062,231 - HP15_3834 0.38 +1.0
4,062,266 + HP15_3834 0.42 +0.1
4,062,274 - HP15_3834 0.43 +0.9
4,062,403 + HP15_3834 0.58 -0.6
4,062,405 + HP15_3834 0.58 +1.2
4,062,466 - HP15_3834 0.65 +0.7
4,062,480 - HP15_3834 0.66 +0.7
4,062,483 + HP15_3834 0.67 +0.3
4,062,610 - HP15_3834 0.81 +0.6
4,062,633 - HP15_3834 0.84 -0.4
4,062,666 - HP15_3834 0.88 -1.6
4,062,680 + HP15_3834 0.89 -0.1
4,062,680 + HP15_3834 0.89 +0.1
4,062,680 + HP15_3834 0.89 +0.7
4,062,680 + HP15_3834 0.89 -0.5
4,062,688 - +1.5
4,062,688 - -0.0

Or see this region's nucleotide sequence