Experiment: L-Proline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3725 and HP15_3726 are separated by 40 nucleotides HP15_3726 and HP15_3727 are separated by 60 nucleotides
HP15_3725: HP15_3725 - PTS system, fructose-specific IIBC component, at 3,942,846 to 3,944,609
_3725
HP15_3726: HP15_3726 - glyoxalase/bleomycin resistance protein/dioxygenase, at 3,944,650 to 3,945,021
_3726
HP15_3727: HP15_3727 - diguanylate cyclase (GGDEF domain), at 3,945,082 to 3,946,371
_3727
Position (kb)
3944
3945
3946 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3943.656 kb on + strand, within HP15_3725 at 3943.656 kb on + strand, within HP15_3725 at 3943.656 kb on + strand, within HP15_3725 at 3943.661 kb on + strand, within HP15_3725 at 3943.664 kb on - strand, within HP15_3725 at 3943.788 kb on + strand, within HP15_3725 at 3943.971 kb on + strand, within HP15_3725 at 3943.984 kb on - strand, within HP15_3725 at 3944.019 kb on - strand, within HP15_3725 at 3944.024 kb on - strand, within HP15_3725 at 3944.127 kb on - strand, within HP15_3725 at 3944.159 kb on - strand, within HP15_3725 at 3944.216 kb on - strand, within HP15_3725 at 3944.245 kb on + strand, within HP15_3725 at 3944.317 kb on - strand, within HP15_3725 at 3944.355 kb on - strand, within HP15_3725 at 3944.401 kb on - strand, within HP15_3725 at 3944.443 kb on - strand at 3944.450 kb on - strand at 3944.450 kb on - strand at 3944.544 kb on - strand at 3944.625 kb on + strand at 3944.630 kb on + strand at 3944.633 kb on - strand at 3944.638 kb on - strand at 3944.705 kb on + strand, within HP15_3726 at 3944.713 kb on - strand, within HP15_3726 at 3944.760 kb on + strand, within HP15_3726 at 3944.760 kb on + strand, within HP15_3726 at 3944.796 kb on + strand, within HP15_3726 at 3944.814 kb on + strand, within HP15_3726 at 3944.888 kb on + strand, within HP15_3726 at 3944.888 kb on + strand, within HP15_3726 at 3944.888 kb on + strand, within HP15_3726 at 3944.896 kb on - strand, within HP15_3726 at 3944.934 kb on + strand, within HP15_3726 at 3944.997 kb on + strand at 3945.137 kb on + strand at 3945.176 kb on + strand at 3945.182 kb on + strand at 3945.271 kb on + strand, within HP15_3727 at 3945.276 kb on + strand, within HP15_3727 at 3945.316 kb on - strand, within HP15_3727 at 3945.318 kb on + strand, within HP15_3727 at 3945.354 kb on - strand, within HP15_3727 at 3945.415 kb on + strand, within HP15_3727 at 3945.469 kb on - strand, within HP15_3727 at 3945.698 kb on + strand, within HP15_3727 at 3945.707 kb on - strand, within HP15_3727 at 3945.768 kb on - strand, within HP15_3727 at 3945.784 kb on + strand, within HP15_3727 at 3945.792 kb on - strand, within HP15_3727 at 3945.848 kb on - strand, within HP15_3727 at 3945.860 kb on - strand, within HP15_3727 at 3945.872 kb on - strand, within HP15_3727 at 3945.986 kb on - strand, within HP15_3727
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline as (N) remove 3,943,656 + HP15_3725 0.46 +1.2 3,943,656 + HP15_3725 0.46 +0.6 3,943,656 + HP15_3725 0.46 -0.5 3,943,661 + HP15_3725 0.46 -1.7 3,943,664 - HP15_3725 0.46 -0.8 3,943,788 + HP15_3725 0.53 +1.0 3,943,971 + HP15_3725 0.64 -0.8 3,943,984 - HP15_3725 0.65 -0.2 3,944,019 - HP15_3725 0.66 +1.1 3,944,024 - HP15_3725 0.67 -0.0 3,944,127 - HP15_3725 0.73 +0.6 3,944,159 - HP15_3725 0.74 -0.8 3,944,216 - HP15_3725 0.78 +0.8 3,944,245 + HP15_3725 0.79 -0.0 3,944,317 - HP15_3725 0.83 +0.4 3,944,355 - HP15_3725 0.86 -1.0 3,944,401 - HP15_3725 0.88 +0.6 3,944,443 - +0.8 3,944,450 - -0.4 3,944,450 - +0.3 3,944,544 - +0.0 3,944,625 + +0.8 3,944,630 + -0.2 3,944,633 - -0.2 3,944,638 - +0.3 3,944,705 + HP15_3726 0.15 -1.6 3,944,713 - HP15_3726 0.17 -0.5 3,944,760 + HP15_3726 0.30 -0.3 3,944,760 + HP15_3726 0.30 -0.8 3,944,796 + HP15_3726 0.39 -0.6 3,944,814 + HP15_3726 0.44 -0.4 3,944,888 + HP15_3726 0.64 -0.8 3,944,888 + HP15_3726 0.64 -1.1 3,944,888 + HP15_3726 0.64 -1.1 3,944,896 - HP15_3726 0.66 +0.1 3,944,934 + HP15_3726 0.76 -0.0 3,944,997 + +0.6 3,945,137 + -0.6 3,945,176 + -0.1 3,945,182 + +0.7 3,945,271 + HP15_3727 0.15 -0.8 3,945,276 + HP15_3727 0.15 +0.4 3,945,316 - HP15_3727 0.18 +1.4 3,945,318 + HP15_3727 0.18 +0.8 3,945,354 - HP15_3727 0.21 +1.7 3,945,415 + HP15_3727 0.26 +0.1 3,945,469 - HP15_3727 0.30 -0.2 3,945,698 + HP15_3727 0.48 +0.2 3,945,707 - HP15_3727 0.48 -0.3 3,945,768 - HP15_3727 0.53 -2.9 3,945,784 + HP15_3727 0.54 -0.6 3,945,792 - HP15_3727 0.55 -1.7 3,945,848 - HP15_3727 0.59 +1.1 3,945,860 - HP15_3727 0.60 +0.6 3,945,872 - HP15_3727 0.61 -0.4 3,945,986 - HP15_3727 0.70 -0.1
Or see this region's nucleotide sequence