Experiment: m.b. Nickel (II) chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c33080 and PGA1_c33090 are separated by 138 nucleotides PGA1_c33090 and PGA1_c33095 are separated by 62 nucleotides PGA1_c33095 and PGA1_c33100 overlap by 171 nucleotides PGA1_c33100 and PGA1_c33110 are separated by 182 nucleotides
PGA1_c33080: PGA1_c33080 - ribosomal large subunit pseudouridine synthase A, at 3,466,358 to 3,467,011
_c33080
PGA1_c33090: PGA1_c33090 - hypothetical protein, at 3,467,150 to 3,467,563
_c33090
PGA1_c33095: PGA1_c33095 - Lysophospholipase L1 and related esterases, at 3,467,626 to 3,468,453
_c33095
PGA1_c33100: PGA1_c33100 - protein RarD, at 3,468,283 to 3,469,176
_c33100
PGA1_c33110: PGA1_c33110 - sarcosine dehydrogenase, at 3,469,359 to 3,471,809
_c33110
Position (kb)
3467
3468
3469 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3466.675 kb on + strand, within PGA1_c33080 at 3466.683 kb on - strand, within PGA1_c33080 at 3466.756 kb on + strand, within PGA1_c33080 at 3466.764 kb on - strand, within PGA1_c33080 at 3466.783 kb on + strand, within PGA1_c33080 at 3466.804 kb on + strand, within PGA1_c33080 at 3466.806 kb on - strand, within PGA1_c33080 at 3466.812 kb on - strand, within PGA1_c33080 at 3466.812 kb on - strand, within PGA1_c33080 at 3466.876 kb on - strand, within PGA1_c33080 at 3466.891 kb on + strand, within PGA1_c33080 at 3466.913 kb on + strand, within PGA1_c33080 at 3466.918 kb on + strand, within PGA1_c33080 at 3466.918 kb on + strand, within PGA1_c33080 at 3466.918 kb on + strand, within PGA1_c33080 at 3466.938 kb on + strand, within PGA1_c33080 at 3466.967 kb on + strand at 3467.002 kb on + strand at 3467.012 kb on + strand at 3467.025 kb on - strand at 3467.088 kb on + strand at 3467.091 kb on + strand at 3467.110 kb on + strand at 3467.146 kb on + strand at 3467.146 kb on + strand at 3467.180 kb on - strand at 3467.180 kb on - strand at 3467.195 kb on + strand, within PGA1_c33090 at 3467.195 kb on + strand, within PGA1_c33090 at 3467.209 kb on + strand, within PGA1_c33090 at 3467.263 kb on + strand, within PGA1_c33090 at 3467.263 kb on + strand, within PGA1_c33090 at 3467.271 kb on - strand, within PGA1_c33090 at 3467.271 kb on - strand, within PGA1_c33090 at 3467.409 kb on + strand, within PGA1_c33090 at 3467.414 kb on + strand, within PGA1_c33090 at 3467.414 kb on + strand, within PGA1_c33090 at 3467.414 kb on + strand, within PGA1_c33090 at 3467.417 kb on - strand, within PGA1_c33090 at 3467.422 kb on - strand, within PGA1_c33090 at 3467.436 kb on - strand, within PGA1_c33090 at 3467.460 kb on - strand, within PGA1_c33090 at 3467.461 kb on + strand, within PGA1_c33090 at 3467.467 kb on - strand, within PGA1_c33090 at 3467.482 kb on + strand, within PGA1_c33090 at 3467.520 kb on + strand, within PGA1_c33090 at 3467.520 kb on + strand, within PGA1_c33090 at 3467.520 kb on + strand, within PGA1_c33090 at 3467.557 kb on + strand at 3467.560 kb on - strand at 3467.567 kb on - strand at 3467.575 kb on - strand at 3467.643 kb on + strand at 3467.695 kb on + strand at 3467.703 kb on - strand at 3467.736 kb on + strand, within PGA1_c33095 at 3467.736 kb on - strand, within PGA1_c33095 at 3467.795 kb on - strand, within PGA1_c33095 at 3467.802 kb on + strand, within PGA1_c33095 at 3467.802 kb on + strand, within PGA1_c33095 at 3467.806 kb on - strand, within PGA1_c33095 at 3467.828 kb on + strand, within PGA1_c33095 at 3467.833 kb on + strand, within PGA1_c33095 at 3467.963 kb on + strand, within PGA1_c33095 at 3467.963 kb on + strand, within PGA1_c33095 at 3467.968 kb on + strand, within PGA1_c33095 at 3467.971 kb on - strand, within PGA1_c33095 at 3467.973 kb on + strand, within PGA1_c33095 at 3467.976 kb on - strand, within PGA1_c33095 at 3467.981 kb on - strand, within PGA1_c33095 at 3467.981 kb on - strand, within PGA1_c33095 at 3467.981 kb on - strand, within PGA1_c33095 at 3468.007 kb on - strand, within PGA1_c33095 at 3468.025 kb on + strand, within PGA1_c33095 at 3468.145 kb on + strand, within PGA1_c33095 at 3468.153 kb on - strand, within PGA1_c33095 at 3468.158 kb on - strand, within PGA1_c33095 at 3468.170 kb on + strand, within PGA1_c33095 at 3468.178 kb on - strand, within PGA1_c33095 at 3468.209 kb on - strand, within PGA1_c33095 at 3468.209 kb on - strand, within PGA1_c33095 at 3468.209 kb on - strand, within PGA1_c33095 at 3468.230 kb on - strand, within PGA1_c33095 at 3468.240 kb on + strand, within PGA1_c33095 at 3468.335 kb on + strand at 3468.378 kb on + strand at 3468.396 kb on - strand at 3468.502 kb on + strand, within PGA1_c33100 at 3468.528 kb on - strand, within PGA1_c33100 at 3468.571 kb on + strand, within PGA1_c33100 at 3468.613 kb on - strand, within PGA1_c33100 at 3468.636 kb on + strand, within PGA1_c33100 at 3468.641 kb on + strand, within PGA1_c33100 at 3468.645 kb on - strand, within PGA1_c33100 at 3468.715 kb on - strand, within PGA1_c33100 at 3468.715 kb on - strand, within PGA1_c33100 at 3468.785 kb on + strand, within PGA1_c33100 at 3468.793 kb on - strand, within PGA1_c33100 at 3468.793 kb on - strand, within PGA1_c33100 at 3468.812 kb on + strand, within PGA1_c33100 at 3468.812 kb on + strand, within PGA1_c33100 at 3468.824 kb on + strand, within PGA1_c33100 at 3468.824 kb on + strand, within PGA1_c33100 at 3468.869 kb on - strand, within PGA1_c33100 at 3468.886 kb on + strand, within PGA1_c33100 at 3468.916 kb on + strand, within PGA1_c33100 at 3468.929 kb on - strand, within PGA1_c33100 at 3468.961 kb on + strand, within PGA1_c33100 at 3468.961 kb on + strand, within PGA1_c33100 at 3468.969 kb on - strand, within PGA1_c33100 at 3468.969 kb on - strand, within PGA1_c33100 at 3469.011 kb on - strand, within PGA1_c33100 at 3469.023 kb on + strand, within PGA1_c33100 at 3469.036 kb on - strand, within PGA1_c33100 at 3469.092 kb on - strand at 3469.138 kb on + strand at 3469.138 kb on + strand at 3469.140 kb on + strand at 3469.230 kb on - strand at 3469.245 kb on + strand at 3469.253 kb on - strand at 3469.270 kb on + strand at 3469.275 kb on + strand at 3469.275 kb on + strand at 3469.275 kb on + strand at 3469.278 kb on - strand at 3469.279 kb on - strand at 3469.283 kb on - strand at 3469.283 kb on - strand at 3469.283 kb on - strand at 3469.283 kb on - strand at 3469.288 kb on - strand at 3469.312 kb on + strand at 3469.312 kb on + strand at 3469.337 kb on - strand at 3469.378 kb on + strand at 3469.386 kb on - strand at 3469.386 kb on - strand at 3469.414 kb on + strand at 3469.421 kb on + strand at 3469.448 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.625 mM remove 3,466,675 + PGA1_c33080 0.48 +0.6 3,466,683 - PGA1_c33080 0.50 +0.4 3,466,756 + PGA1_c33080 0.61 -0.2 3,466,764 - PGA1_c33080 0.62 -0.3 3,466,783 + PGA1_c33080 0.65 +0.0 3,466,804 + PGA1_c33080 0.68 +0.5 3,466,806 - PGA1_c33080 0.69 -0.8 3,466,812 - PGA1_c33080 0.69 +0.3 3,466,812 - PGA1_c33080 0.69 +0.0 3,466,876 - PGA1_c33080 0.79 -0.5 3,466,891 + PGA1_c33080 0.81 -1.0 3,466,913 + PGA1_c33080 0.85 +1.0 3,466,918 + PGA1_c33080 0.86 -0.8 3,466,918 + PGA1_c33080 0.86 -1.0 3,466,918 + PGA1_c33080 0.86 -0.0 3,466,938 + PGA1_c33080 0.89 -1.9 3,466,967 + -0.6 3,467,002 + -1.6 3,467,012 + +1.4 3,467,025 - +1.2 3,467,088 + -0.6 3,467,091 + -1.2 3,467,110 + +0.8 3,467,146 + +0.3 3,467,146 + -1.0 3,467,180 - +1.0 3,467,180 - +1.0 3,467,195 + PGA1_c33090 0.11 -0.8 3,467,195 + PGA1_c33090 0.11 -0.2 3,467,209 + PGA1_c33090 0.14 +0.6 3,467,263 + PGA1_c33090 0.27 +0.7 3,467,263 + PGA1_c33090 0.27 +0.3 3,467,271 - PGA1_c33090 0.29 -0.9 3,467,271 - PGA1_c33090 0.29 +1.6 3,467,409 + PGA1_c33090 0.63 -1.8 3,467,414 + PGA1_c33090 0.64 +0.5 3,467,414 + PGA1_c33090 0.64 +1.0 3,467,414 + PGA1_c33090 0.64 -1.8 3,467,417 - PGA1_c33090 0.64 +0.4 3,467,422 - PGA1_c33090 0.66 +1.2 3,467,436 - PGA1_c33090 0.69 +0.1 3,467,460 - PGA1_c33090 0.75 +1.1 3,467,461 + PGA1_c33090 0.75 +0.4 3,467,467 - PGA1_c33090 0.77 +0.2 3,467,482 + PGA1_c33090 0.80 -0.9 3,467,520 + PGA1_c33090 0.89 +0.3 3,467,520 + PGA1_c33090 0.89 +1.7 3,467,520 + PGA1_c33090 0.89 +0.0 3,467,557 + -0.7 3,467,560 - +0.7 3,467,567 - -1.0 3,467,575 - -0.7 3,467,643 + +1.0 3,467,695 + +0.3 3,467,703 - -1.0 3,467,736 + PGA1_c33095 0.13 +1.0 3,467,736 - PGA1_c33095 0.13 +0.3 3,467,795 - PGA1_c33095 0.20 +0.0 3,467,802 + PGA1_c33095 0.21 +1.1 3,467,802 + PGA1_c33095 0.21 +0.4 3,467,806 - PGA1_c33095 0.22 +0.3 3,467,828 + PGA1_c33095 0.24 -0.8 3,467,833 + PGA1_c33095 0.25 -1.8 3,467,963 + PGA1_c33095 0.41 +2.0 3,467,963 + PGA1_c33095 0.41 -0.1 3,467,968 + PGA1_c33095 0.41 +0.3 3,467,971 - PGA1_c33095 0.42 +0.9 3,467,973 + PGA1_c33095 0.42 +0.9 3,467,976 - PGA1_c33095 0.42 +0.2 3,467,981 - PGA1_c33095 0.43 +0.1 3,467,981 - PGA1_c33095 0.43 +0.6 3,467,981 - PGA1_c33095 0.43 -0.8 3,468,007 - PGA1_c33095 0.46 +0.0 3,468,025 + PGA1_c33095 0.48 -1.2 3,468,145 + PGA1_c33095 0.63 +0.2 3,468,153 - PGA1_c33095 0.64 +1.0 3,468,158 - PGA1_c33095 0.64 -1.0 3,468,170 + PGA1_c33095 0.66 -0.3 3,468,178 - PGA1_c33095 0.67 -0.3 3,468,209 - PGA1_c33095 0.70 +1.6 3,468,209 - PGA1_c33095 0.70 +0.6 3,468,209 - PGA1_c33095 0.70 -0.4 3,468,230 - PGA1_c33095 0.73 +1.0 3,468,240 + PGA1_c33095 0.74 -0.8 3,468,335 + +0.4 3,468,378 + +2.2 3,468,396 - -0.4 3,468,502 + PGA1_c33100 0.24 +1.7 3,468,528 - PGA1_c33100 0.27 +0.0 3,468,571 + PGA1_c33100 0.32 +1.0 3,468,613 - PGA1_c33100 0.37 -0.8 3,468,636 + PGA1_c33100 0.39 +0.0 3,468,641 + PGA1_c33100 0.40 +0.0 3,468,645 - PGA1_c33100 0.40 +0.3 3,468,715 - PGA1_c33100 0.48 -0.5 3,468,715 - PGA1_c33100 0.48 +0.0 3,468,785 + PGA1_c33100 0.56 -0.5 3,468,793 - PGA1_c33100 0.57 -1.9 3,468,793 - PGA1_c33100 0.57 -0.2 3,468,812 + PGA1_c33100 0.59 +1.4 3,468,812 + PGA1_c33100 0.59 -0.7 3,468,824 + PGA1_c33100 0.61 -0.1 3,468,824 + PGA1_c33100 0.61 -1.2 3,468,869 - PGA1_c33100 0.66 -1.3 3,468,886 + PGA1_c33100 0.67 -0.5 3,468,916 + PGA1_c33100 0.71 +1.4 3,468,929 - PGA1_c33100 0.72 +0.6 3,468,961 + PGA1_c33100 0.76 -0.6 3,468,961 + PGA1_c33100 0.76 +0.4 3,468,969 - PGA1_c33100 0.77 -1.6 3,468,969 - PGA1_c33100 0.77 -0.7 3,469,011 - PGA1_c33100 0.81 +0.3 3,469,023 + PGA1_c33100 0.83 -0.2 3,469,036 - PGA1_c33100 0.84 +0.0 3,469,092 - -1.0 3,469,138 + +1.3 3,469,138 + +0.0 3,469,140 + +1.0 3,469,230 - +0.4 3,469,245 + -0.5 3,469,253 - +0.6 3,469,270 + +0.0 3,469,275 + +0.3 3,469,275 + +2.0 3,469,275 + -0.9 3,469,278 - -0.1 3,469,279 - -0.3 3,469,283 - -0.1 3,469,283 - +0.1 3,469,283 - -2.2 3,469,283 - +1.2 3,469,288 - +1.5 3,469,312 + -0.7 3,469,312 + +0.3 3,469,337 - +0.5 3,469,378 + -0.3 3,469,386 - +0.6 3,469,386 - +0.5 3,469,414 + -1.2 3,469,421 + -0.5 3,469,448 + +0.5
Or see this region's nucleotide sequence