Strain Fitness in Marinobacter adhaerens HP15 around HP15_304

Experiment: L-Proline as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_302 and HP15_303 are separated by 148 nucleotidesHP15_303 and HP15_304 are separated by 86 nucleotidesHP15_304 and HP15_305 are separated by 172 nucleotides HP15_302: HP15_302 - protein containing pseudouridine synthase domain, at 292,887 to 293,708 _302 HP15_303: HP15_303 - guanylate kinase, at 293,857 to 294,489 _303 HP15_304: HP15_304 - DNA-directed RNA polymerase subunit omega, at 294,576 to 294,788 _304 HP15_305: HP15_305 - guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 294,961 to 297,102 _305 Position (kb) 294 295Strain fitness (log2 ratio) -1 0 1at 293.664 kb on + strandat 293.678 kb on + strandat 293.734 kb on - strandat 293.745 kb on - strandat 293.759 kb on + strandat 293.759 kb on + strandat 293.759 kb on + strandat 293.760 kb on - strandat 293.767 kb on - strandat 293.769 kb on - strandat 293.769 kb on - strandat 293.838 kb on + strandat 293.838 kb on + strandat 294.764 kb on + strand, within HP15_304

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline as (N)
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293,664 + +1.4
293,678 + -0.6
293,734 - +0.4
293,745 - +0.2
293,759 + +1.0
293,759 + -0.6
293,759 + -0.6
293,760 - -0.4
293,767 - +1.2
293,769 - -0.6
293,769 - -0.3
293,838 + -0.3
293,838 + +1.0
294,764 + HP15_304 0.88 -0.1

Or see this region's nucleotide sequence