Experiment: L-Proline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2735 and HP15_2736 are separated by 48 nucleotides HP15_2736 and HP15_2737 are separated by 187 nucleotides HP15_2737 and HP15_2738 are separated by 10 nucleotides HP15_2738 and HP15_2739 are separated by 13 nucleotides
HP15_2735: HP15_2735 - diguanylate cyclase with PAS/PAC sensor, at 2,888,601 to 2,889,539
_2735
HP15_2736: HP15_2736 - pseudoazurin, at 2,889,588 to 2,890,037
_2736
HP15_2737: HP15_2737 - Coq7 family protein, at 2,890,225 to 2,890,803
_2737
HP15_2738: HP15_2738 - hypothetical protein, at 2,890,814 to 2,891,332
_2738
HP15_2739: HP15_2739 - DNA-3-methyladenine glycosidase II, at 2,891,346 to 2,891,975
_2739
Position (kb)
2890
2891 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2889.416 kb on - strand, within HP15_2735 at 2889.714 kb on + strand, within HP15_2736 at 2889.720 kb on + strand, within HP15_2736 at 2889.752 kb on + strand, within HP15_2736 at 2889.752 kb on + strand, within HP15_2736 at 2889.773 kb on + strand, within HP15_2736 at 2889.812 kb on - strand, within HP15_2736 at 2889.820 kb on - strand, within HP15_2736 at 2889.822 kb on + strand, within HP15_2736 at 2889.830 kb on + strand, within HP15_2736 at 2889.844 kb on + strand, within HP15_2736 at 2889.846 kb on + strand, within HP15_2736 at 2889.846 kb on + strand, within HP15_2736 at 2889.854 kb on - strand, within HP15_2736 at 2890.006 kb on + strand at 2890.077 kb on + strand at 2890.096 kb on + strand at 2890.120 kb on + strand at 2890.250 kb on - strand at 2890.264 kb on - strand at 2890.332 kb on - strand, within HP15_2737 at 2890.436 kb on + strand, within HP15_2737 at 2890.444 kb on - strand, within HP15_2737 at 2890.444 kb on - strand, within HP15_2737 at 2890.562 kb on - strand, within HP15_2737 at 2890.597 kb on - strand, within HP15_2737 at 2890.662 kb on - strand, within HP15_2737 at 2890.664 kb on - strand, within HP15_2737 at 2890.731 kb on + strand, within HP15_2737 at 2890.943 kb on + strand, within HP15_2738 at 2890.943 kb on + strand, within HP15_2738 at 2891.059 kb on - strand, within HP15_2738 at 2891.116 kb on - strand, within HP15_2738 at 2891.145 kb on - strand, within HP15_2738 at 2891.145 kb on - strand, within HP15_2738 at 2891.177 kb on - strand, within HP15_2738 at 2891.218 kb on - strand, within HP15_2738 at 2891.234 kb on + strand, within HP15_2738 at 2891.234 kb on + strand, within HP15_2738 at 2891.234 kb on + strand, within HP15_2738 at 2891.407 kb on - strand at 2891.620 kb on + strand, within HP15_2739 at 2891.687 kb on - strand, within HP15_2739 at 2891.756 kb on + strand, within HP15_2739 at 2891.787 kb on + strand, within HP15_2739 at 2891.787 kb on + strand, within HP15_2739
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline as (N) remove 2,889,416 - HP15_2735 0.87 -0.0 2,889,714 + HP15_2736 0.28 +0.9 2,889,720 + HP15_2736 0.29 +0.9 2,889,752 + HP15_2736 0.36 +0.2 2,889,752 + HP15_2736 0.36 -0.0 2,889,773 + HP15_2736 0.41 +1.0 2,889,812 - HP15_2736 0.50 -0.0 2,889,820 - HP15_2736 0.52 +0.5 2,889,822 + HP15_2736 0.52 +0.5 2,889,830 + HP15_2736 0.54 +0.6 2,889,844 + HP15_2736 0.57 -0.3 2,889,846 + HP15_2736 0.57 +2.2 2,889,846 + HP15_2736 0.57 +0.2 2,889,854 - HP15_2736 0.59 -0.0 2,890,006 + -0.0 2,890,077 + -0.3 2,890,096 + +1.2 2,890,120 + -0.3 2,890,250 - +1.3 2,890,264 - -0.7 2,890,332 - HP15_2737 0.18 -0.3 2,890,436 + HP15_2737 0.36 +0.8 2,890,444 - HP15_2737 0.38 +0.8 2,890,444 - HP15_2737 0.38 +0.1 2,890,562 - HP15_2737 0.58 -2.3 2,890,597 - HP15_2737 0.64 -0.0 2,890,662 - HP15_2737 0.75 +0.2 2,890,664 - HP15_2737 0.76 +1.9 2,890,731 + HP15_2737 0.87 -0.2 2,890,943 + HP15_2738 0.25 -0.5 2,890,943 + HP15_2738 0.25 -0.5 2,891,059 - HP15_2738 0.47 +0.2 2,891,116 - HP15_2738 0.58 -0.4 2,891,145 - HP15_2738 0.64 -0.2 2,891,145 - HP15_2738 0.64 -0.4 2,891,177 - HP15_2738 0.70 +0.8 2,891,218 - HP15_2738 0.78 +0.2 2,891,234 + HP15_2738 0.81 +0.4 2,891,234 + HP15_2738 0.81 +0.5 2,891,234 + HP15_2738 0.81 -0.1 2,891,407 - +1.1 2,891,620 + HP15_2739 0.43 +0.5 2,891,687 - HP15_2739 0.54 -0.6 2,891,756 + HP15_2739 0.65 +1.0 2,891,787 + HP15_2739 0.70 +0.8 2,891,787 + HP15_2739 0.70 -0.9
Or see this region's nucleotide sequence