Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02620

Experiment: m.b. Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02600 and PGA1_c02610 overlap by 4 nucleotidesPGA1_c02610 and PGA1_c02620 overlap by 1 nucleotidesPGA1_c02620 and PGA1_c02630 are separated by 43 nucleotides PGA1_c02600: PGA1_c02600 - putative high-affinity branched-chain amino acid transport system permease protein LivM, at 244,034 to 245,119 _c02600 PGA1_c02610: PGA1_c02610 - putative high-affinity branched-chain amino acid transport ATP-binding protein LivG, at 245,116 to 245,883 _c02610 PGA1_c02620: PGA1_c02620 - high-affinity branched-chain amino acid transport ATP-binding protein LivF, at 245,883 to 246,656 _c02620 PGA1_c02630: PGA1_c02630 - putative long-chain-fatty-acid-CoA ligase, at 246,700 to 248,637 _c02630 Position (kb) 245 246 247Strain fitness (log2 ratio) -2 -1 0 1 2 3at 244.913 kb on + strand, within PGA1_c02600at 244.919 kb on + strand, within PGA1_c02600at 244.919 kb on + strand, within PGA1_c02600at 244.919 kb on + strand, within PGA1_c02600at 244.924 kb on + strand, within PGA1_c02600at 244.924 kb on + strand, within PGA1_c02600at 244.927 kb on - strand, within PGA1_c02600at 244.982 kb on - strand, within PGA1_c02600at 244.982 kb on - strand, within PGA1_c02600at 245.040 kb on + strandat 245.048 kb on - strandat 245.048 kb on - strandat 245.048 kb on - strandat 245.048 kb on - strandat 245.050 kb on + strandat 245.058 kb on - strandat 245.058 kb on - strandat 245.110 kb on + strandat 245.110 kb on + strandat 245.113 kb on + strandat 245.115 kb on + strandat 245.118 kb on - strandat 245.118 kb on - strandat 245.118 kb on - strandat 245.118 kb on - strandat 245.118 kb on - strandat 245.124 kb on + strandat 245.127 kb on - strandat 245.132 kb on - strandat 245.205 kb on + strand, within PGA1_c02610at 245.208 kb on - strand, within PGA1_c02610at 245.213 kb on - strand, within PGA1_c02610at 245.227 kb on + strand, within PGA1_c02610at 245.230 kb on - strand, within PGA1_c02610at 245.289 kb on - strand, within PGA1_c02610at 245.322 kb on + strand, within PGA1_c02610at 245.322 kb on + strand, within PGA1_c02610at 245.322 kb on + strand, within PGA1_c02610at 245.322 kb on + strand, within PGA1_c02610at 245.330 kb on - strand, within PGA1_c02610at 245.330 kb on - strand, within PGA1_c02610at 245.330 kb on - strand, within PGA1_c02610at 245.373 kb on - strand, within PGA1_c02610at 245.398 kb on + strand, within PGA1_c02610at 245.429 kb on + strand, within PGA1_c02610at 245.448 kb on + strand, within PGA1_c02610at 245.535 kb on + strand, within PGA1_c02610at 245.549 kb on - strand, within PGA1_c02610at 245.560 kb on - strand, within PGA1_c02610at 245.571 kb on + strand, within PGA1_c02610at 245.571 kb on + strand, within PGA1_c02610at 245.571 kb on + strand, within PGA1_c02610at 245.579 kb on - strand, within PGA1_c02610at 245.579 kb on - strand, within PGA1_c02610at 245.581 kb on - strand, within PGA1_c02610at 245.613 kb on + strand, within PGA1_c02610at 245.646 kb on + strand, within PGA1_c02610at 245.737 kb on + strand, within PGA1_c02610at 245.760 kb on - strand, within PGA1_c02610at 245.790 kb on + strand, within PGA1_c02610at 245.835 kb on + strandat 245.835 kb on + strandat 245.835 kb on + strandat 245.843 kb on - strandat 245.882 kb on + strandat 245.886 kb on + strandat 245.902 kb on - strandat 245.937 kb on - strandat 245.937 kb on - strandat 245.964 kb on + strand, within PGA1_c02620at 245.964 kb on + strand, within PGA1_c02620at 245.964 kb on + strand, within PGA1_c02620at 245.972 kb on - strand, within PGA1_c02620at 245.978 kb on + strand, within PGA1_c02620at 246.013 kb on + strand, within PGA1_c02620at 246.033 kb on + strand, within PGA1_c02620at 246.086 kb on + strand, within PGA1_c02620at 246.107 kb on - strand, within PGA1_c02620at 246.137 kb on - strand, within PGA1_c02620at 246.169 kb on + strand, within PGA1_c02620at 246.172 kb on - strand, within PGA1_c02620at 246.181 kb on + strand, within PGA1_c02620at 246.181 kb on + strand, within PGA1_c02620at 246.195 kb on + strand, within PGA1_c02620at 246.203 kb on - strand, within PGA1_c02620at 246.229 kb on - strand, within PGA1_c02620at 246.229 kb on - strand, within PGA1_c02620at 246.295 kb on - strand, within PGA1_c02620at 246.379 kb on + strand, within PGA1_c02620at 246.380 kb on - strand, within PGA1_c02620at 246.381 kb on - strand, within PGA1_c02620at 246.387 kb on - strand, within PGA1_c02620at 246.387 kb on - strand, within PGA1_c02620at 246.447 kb on + strand, within PGA1_c02620at 246.465 kb on + strand, within PGA1_c02620at 246.497 kb on + strand, within PGA1_c02620at 246.511 kb on - strand, within PGA1_c02620at 246.609 kb on + strandat 246.609 kb on + strandat 246.609 kb on + strandat 246.617 kb on - strandat 246.617 kb on - strandat 246.617 kb on - strandat 246.655 kb on + strandat 246.663 kb on - strandat 246.699 kb on + strandat 246.710 kb on + strandat 246.712 kb on - strandat 246.718 kb on - strandat 246.718 kb on - strandat 246.727 kb on - strandat 246.751 kb on - strandat 246.774 kb on + strandat 246.782 kb on - strandat 246.836 kb on - strandat 246.861 kb on + strandat 246.884 kb on + strandat 246.892 kb on - strandat 246.953 kb on + strand, within PGA1_c02630at 246.977 kb on + strand, within PGA1_c02630at 246.980 kb on - strand, within PGA1_c02630at 246.992 kb on + strand, within PGA1_c02630at 247.018 kb on + strand, within PGA1_c02630at 247.058 kb on - strand, within PGA1_c02630at 247.098 kb on + strand, within PGA1_c02630at 247.098 kb on + strand, within PGA1_c02630at 247.098 kb on + strand, within PGA1_c02630at 247.098 kb on + strand, within PGA1_c02630at 247.106 kb on - strand, within PGA1_c02630at 247.106 kb on - strand, within PGA1_c02630at 247.106 kb on - strand, within PGA1_c02630at 247.193 kb on + strand, within PGA1_c02630at 247.216 kb on + strand, within PGA1_c02630at 247.222 kb on + strand, within PGA1_c02630at 247.230 kb on - strand, within PGA1_c02630at 247.232 kb on + strand, within PGA1_c02630at 247.240 kb on + strand, within PGA1_c02630at 247.255 kb on + strand, within PGA1_c02630at 247.307 kb on - strand, within PGA1_c02630at 247.307 kb on - strand, within PGA1_c02630at 247.342 kb on - strand, within PGA1_c02630at 247.342 kb on - strand, within PGA1_c02630at 247.342 kb on - strand, within PGA1_c02630at 247.342 kb on - strand, within PGA1_c02630at 247.365 kb on + strand, within PGA1_c02630at 247.374 kb on + strand, within PGA1_c02630at 247.382 kb on - strand, within PGA1_c02630at 247.392 kb on + strand, within PGA1_c02630at 247.392 kb on + strand, within PGA1_c02630at 247.395 kb on - strand, within PGA1_c02630at 247.409 kb on + strand, within PGA1_c02630at 247.409 kb on + strand, within PGA1_c02630at 247.409 kb on + strand, within PGA1_c02630at 247.417 kb on - strand, within PGA1_c02630at 247.417 kb on - strand, within PGA1_c02630at 247.419 kb on + strand, within PGA1_c02630at 247.419 kb on + strand, within PGA1_c02630at 247.419 kb on + strand, within PGA1_c02630at 247.419 kb on + strand, within PGA1_c02630at 247.419 kb on + strand, within PGA1_c02630at 247.419 kb on + strand, within PGA1_c02630at 247.419 kb on + strand, within PGA1_c02630at 247.419 kb on + strand, within PGA1_c02630at 247.419 kb on + strand, within PGA1_c02630at 247.427 kb on - strand, within PGA1_c02630at 247.427 kb on - strand, within PGA1_c02630at 247.427 kb on - strand, within PGA1_c02630at 247.427 kb on - strand, within PGA1_c02630at 247.432 kb on + strand, within PGA1_c02630at 247.522 kb on - strand, within PGA1_c02630at 247.537 kb on - strand, within PGA1_c02630at 247.545 kb on + strand, within PGA1_c02630at 247.549 kb on + strand, within PGA1_c02630at 247.557 kb on - strand, within PGA1_c02630at 247.622 kb on + strand, within PGA1_c02630at 247.632 kb on + strand, within PGA1_c02630at 247.632 kb on + strand, within PGA1_c02630

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.625 mM
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244,913 + PGA1_c02600 0.81 +0.4
244,919 + PGA1_c02600 0.81 +0.7
244,919 + PGA1_c02600 0.81 +1.0
244,919 + PGA1_c02600 0.81 +1.3
244,924 + PGA1_c02600 0.82 -0.1
244,924 + PGA1_c02600 0.82 -0.5
244,927 - PGA1_c02600 0.82 +0.6
244,982 - PGA1_c02600 0.87 +1.2
244,982 - PGA1_c02600 0.87 -1.0
245,040 + -1.4
245,048 - -1.9
245,048 - +1.0
245,048 - +0.5
245,048 - +0.8
245,050 + -0.0
245,058 - +1.3
245,058 - +0.5
245,110 + +0.2
245,110 + -1.5
245,113 + +1.0
245,115 + +1.2
245,118 - -0.6
245,118 - +1.7
245,118 - +0.4
245,118 - -0.6
245,118 - +2.0
245,124 + -1.6
245,127 - -0.6
245,132 - -0.9
245,205 + PGA1_c02610 0.12 +0.8
245,208 - PGA1_c02610 0.12 -0.8
245,213 - PGA1_c02610 0.13 -1.0
245,227 + PGA1_c02610 0.14 -0.3
245,230 - PGA1_c02610 0.15 -1.8
245,289 - PGA1_c02610 0.23 -2.4
245,322 + PGA1_c02610 0.27 -0.6
245,322 + PGA1_c02610 0.27 -2.1
245,322 + PGA1_c02610 0.27 -1.1
245,322 + PGA1_c02610 0.27 -1.7
245,330 - PGA1_c02610 0.28 +0.7
245,330 - PGA1_c02610 0.28 +0.5
245,330 - PGA1_c02610 0.28 +0.8
245,373 - PGA1_c02610 0.33 -1.7
245,398 + PGA1_c02610 0.37 +0.6
245,429 + PGA1_c02610 0.41 +2.3
245,448 + PGA1_c02610 0.43 -0.0
245,535 + PGA1_c02610 0.55 -1.0
245,549 - PGA1_c02610 0.56 +0.8
245,560 - PGA1_c02610 0.58 +1.0
245,571 + PGA1_c02610 0.59 -0.6
245,571 + PGA1_c02610 0.59 -1.0
245,571 + PGA1_c02610 0.59 -0.0
245,579 - PGA1_c02610 0.60 -0.2
245,579 - PGA1_c02610 0.60 -0.6
245,581 - PGA1_c02610 0.61 +0.4
245,613 + PGA1_c02610 0.65 +1.7
245,646 + PGA1_c02610 0.69 +0.6
245,737 + PGA1_c02610 0.81 -0.4
245,760 - PGA1_c02610 0.84 -0.0
245,790 + PGA1_c02610 0.88 -2.0
245,835 + +0.4
245,835 + +0.7
245,835 + -0.6
245,843 - +2.0
245,882 + -1.3
245,886 + +0.3
245,902 - -1.3
245,937 - -0.4
245,937 - +1.6
245,964 + PGA1_c02620 0.10 +0.1
245,964 + PGA1_c02620 0.10 -0.4
245,964 + PGA1_c02620 0.10 -1.0
245,972 - PGA1_c02620 0.11 +1.0
245,978 + PGA1_c02620 0.12 -0.6
246,013 + PGA1_c02620 0.17 -0.4
246,033 + PGA1_c02620 0.19 +1.7
246,086 + PGA1_c02620 0.26 +0.3
246,107 - PGA1_c02620 0.29 -0.2
246,137 - PGA1_c02620 0.33 -1.5
246,169 + PGA1_c02620 0.37 +1.5
246,172 - PGA1_c02620 0.37 +0.5
246,181 + PGA1_c02620 0.39 -1.4
246,181 + PGA1_c02620 0.39 -1.6
246,195 + PGA1_c02620 0.40 +2.1
246,203 - PGA1_c02620 0.41 +0.5
246,229 - PGA1_c02620 0.45 +1.5
246,229 - PGA1_c02620 0.45 +1.8
246,295 - PGA1_c02620 0.53 -0.3
246,379 + PGA1_c02620 0.64 +1.2
246,380 - PGA1_c02620 0.64 +0.9
246,381 - PGA1_c02620 0.64 -0.8
246,387 - PGA1_c02620 0.65 +0.5
246,387 - PGA1_c02620 0.65 +2.0
246,447 + PGA1_c02620 0.73 -0.4
246,465 + PGA1_c02620 0.75 -2.4
246,497 + PGA1_c02620 0.79 +0.6
246,511 - PGA1_c02620 0.81 +1.0
246,609 + -0.2
246,609 + +1.1
246,609 + -1.2
246,617 - -2.2
246,617 - -1.4
246,617 - +1.8
246,655 + -2.1
246,663 - -0.4
246,699 + +0.8
246,710 + -0.3
246,712 - -0.6
246,718 - -0.6
246,718 - -0.3
246,727 - +0.8
246,751 - +1.3
246,774 + +0.3
246,782 - -0.4
246,836 - -1.0
246,861 + +1.7
246,884 + -1.2
246,892 - +0.8
246,953 + PGA1_c02630 0.13 +1.0
246,977 + PGA1_c02630 0.14 -0.4
246,980 - PGA1_c02630 0.14 +0.4
246,992 + PGA1_c02630 0.15 -1.4
247,018 + PGA1_c02630 0.16 +0.5
247,058 - PGA1_c02630 0.18 -0.2
247,098 + PGA1_c02630 0.21 -1.0
247,098 + PGA1_c02630 0.21 +0.4
247,098 + PGA1_c02630 0.21 +0.4
247,098 + PGA1_c02630 0.21 -1.4
247,106 - PGA1_c02630 0.21 +0.5
247,106 - PGA1_c02630 0.21 -2.6
247,106 - PGA1_c02630 0.21 -0.0
247,193 + PGA1_c02630 0.25 -0.9
247,216 + PGA1_c02630 0.27 -1.5
247,222 + PGA1_c02630 0.27 +1.1
247,230 - PGA1_c02630 0.27 -0.2
247,232 + PGA1_c02630 0.27 -0.3
247,240 + PGA1_c02630 0.28 -0.0
247,255 + PGA1_c02630 0.29 +1.5
247,307 - PGA1_c02630 0.31 -2.5
247,307 - PGA1_c02630 0.31 -0.0
247,342 - PGA1_c02630 0.33 -0.0
247,342 - PGA1_c02630 0.33 +1.0
247,342 - PGA1_c02630 0.33 +1.0
247,342 - PGA1_c02630 0.33 -0.2
247,365 + PGA1_c02630 0.34 -0.9
247,374 + PGA1_c02630 0.35 +2.0
247,382 - PGA1_c02630 0.35 -0.1
247,392 + PGA1_c02630 0.36 +0.9
247,392 + PGA1_c02630 0.36 +1.0
247,395 - PGA1_c02630 0.36 -1.0
247,409 + PGA1_c02630 0.37 +0.1
247,409 + PGA1_c02630 0.37 -0.0
247,409 + PGA1_c02630 0.37 -2.0
247,417 - PGA1_c02630 0.37 -0.6
247,417 - PGA1_c02630 0.37 -2.2
247,419 + PGA1_c02630 0.37 +2.0
247,419 + PGA1_c02630 0.37 +0.0
247,419 + PGA1_c02630 0.37 +1.1
247,419 + PGA1_c02630 0.37 -1.2
247,419 + PGA1_c02630 0.37 +1.0
247,419 + PGA1_c02630 0.37 +1.0
247,419 + PGA1_c02630 0.37 -0.4
247,419 + PGA1_c02630 0.37 -1.2
247,419 + PGA1_c02630 0.37 -1.0
247,427 - PGA1_c02630 0.38 +0.4
247,427 - PGA1_c02630 0.38 -0.6
247,427 - PGA1_c02630 0.38 +1.1
247,427 - PGA1_c02630 0.38 +0.4
247,432 + PGA1_c02630 0.38 -0.5
247,522 - PGA1_c02630 0.42 +2.5
247,537 - PGA1_c02630 0.43 +0.5
247,545 + PGA1_c02630 0.44 -0.8
247,549 + PGA1_c02630 0.44 +1.0
247,557 - PGA1_c02630 0.44 -0.0
247,622 + PGA1_c02630 0.48 +3.5
247,632 + PGA1_c02630 0.48 -0.0
247,632 + PGA1_c02630 0.48 +1.5

Or see this region's nucleotide sequence