Experiment: L-Proline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2134 and HP15_2135 are separated by 2 nucleotides HP15_2135 and HP15_2136 overlap by 4 nucleotides HP15_2136 and HP15_2137 are separated by 91 nucleotides
HP15_2134: HP15_2134 - conserved hypothetical protein, at 2,236,110 to 2,237,111
_2134
HP15_2135: HP15_2135 - biopolymer transport protein ExbD/TolR, at 2,237,114 to 2,237,614
_2135
HP15_2136: HP15_2136 - biopolymer transport protein ExbD/TolR, at 2,237,611 to 2,238,057
_2136
HP15_2137: HP15_2137 - biopolymer transport protein, at 2,238,149 to 2,238,856
_2137
Position (kb)
2237
2238 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2236.193 kb on - strand at 2236.264 kb on - strand, within HP15_2134 at 2236.283 kb on + strand, within HP15_2134 at 2236.443 kb on - strand, within HP15_2134 at 2236.463 kb on - strand, within HP15_2134 at 2236.496 kb on + strand, within HP15_2134 at 2236.660 kb on + strand, within HP15_2134 at 2236.699 kb on + strand, within HP15_2134 at 2236.834 kb on + strand, within HP15_2134 at 2236.834 kb on + strand, within HP15_2134 at 2236.842 kb on - strand, within HP15_2134 at 2236.985 kb on + strand, within HP15_2134 at 2237.224 kb on + strand, within HP15_2135 at 2237.263 kb on + strand, within HP15_2135 at 2237.312 kb on + strand, within HP15_2135 at 2237.318 kb on - strand, within HP15_2135 at 2237.338 kb on - strand, within HP15_2135 at 2237.402 kb on - strand, within HP15_2135 at 2237.406 kb on - strand, within HP15_2135 at 2237.459 kb on - strand, within HP15_2135 at 2237.495 kb on - strand, within HP15_2135 at 2237.706 kb on + strand, within HP15_2136 at 2237.831 kb on + strand, within HP15_2136 at 2237.839 kb on - strand, within HP15_2136 at 2238.002 kb on + strand, within HP15_2136 at 2238.002 kb on + strand, within HP15_2136 at 2238.061 kb on - strand at 2238.300 kb on + strand, within HP15_2137 at 2238.308 kb on - strand, within HP15_2137 at 2238.318 kb on + strand, within HP15_2137 at 2238.368 kb on + strand, within HP15_2137 at 2238.465 kb on + strand, within HP15_2137 at 2238.500 kb on - strand, within HP15_2137 at 2238.523 kb on + strand, within HP15_2137
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline as (N) remove 2,236,193 - -0.8 2,236,264 - HP15_2134 0.15 +0.9 2,236,283 + HP15_2134 0.17 -1.1 2,236,443 - HP15_2134 0.33 +0.3 2,236,463 - HP15_2134 0.35 -0.7 2,236,496 + HP15_2134 0.39 -0.5 2,236,660 + HP15_2134 0.55 -1.0 2,236,699 + HP15_2134 0.59 +0.0 2,236,834 + HP15_2134 0.72 -0.6 2,236,834 + HP15_2134 0.72 +2.0 2,236,842 - HP15_2134 0.73 -1.2 2,236,985 + HP15_2134 0.87 +0.8 2,237,224 + HP15_2135 0.22 +1.2 2,237,263 + HP15_2135 0.30 +2.8 2,237,312 + HP15_2135 0.40 -0.3 2,237,318 - HP15_2135 0.41 +1.5 2,237,338 - HP15_2135 0.45 -0.3 2,237,402 - HP15_2135 0.57 +1.5 2,237,406 - HP15_2135 0.58 -0.2 2,237,459 - HP15_2135 0.69 +0.1 2,237,495 - HP15_2135 0.76 -0.7 2,237,706 + HP15_2136 0.21 +0.6 2,237,831 + HP15_2136 0.49 +0.1 2,237,839 - HP15_2136 0.51 -0.5 2,238,002 + HP15_2136 0.87 +0.2 2,238,002 + HP15_2136 0.87 -0.7 2,238,061 - +2.3 2,238,300 + HP15_2137 0.21 +0.2 2,238,308 - HP15_2137 0.22 -1.9 2,238,318 + HP15_2137 0.24 +0.3 2,238,368 + HP15_2137 0.31 -0.4 2,238,465 + HP15_2137 0.45 +0.7 2,238,500 - HP15_2137 0.50 -1.6 2,238,523 + HP15_2137 0.53 -0.3
Or see this region's nucleotide sequence