Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20340

Experiment: m.b. Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c20330 and PGA1_c20340 are separated by 201 nucleotidesPGA1_c20340 and PGA1_c20350 are separated by 131 nucleotides PGA1_c20330: PGA1_c20330 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase IspG, at 2,112,455 to 2,113,576 _c20330 PGA1_c20340: PGA1_c20340 - Uncharacterized protein conserved in bacteria, at 2,113,778 to 2,115,001 _c20340 PGA1_c20350: PGA1_c20350 - 5-aminolevulinate synthase HemA, at 2,115,133 to 2,116,362 _c20350 Position (kb) 2113 2114 2115 2116Strain fitness (log2 ratio) -3 -2 -1 0 1at 2113.634 kb on + strandat 2113.668 kb on + strandat 2113.676 kb on - strandat 2113.724 kb on + strandat 2113.743 kb on - strandat 2113.975 kb on + strand, within PGA1_c20340at 2114.002 kb on - strand, within PGA1_c20340at 2114.002 kb on - strand, within PGA1_c20340at 2114.002 kb on - strand, within PGA1_c20340at 2114.002 kb on - strand, within PGA1_c20340at 2114.002 kb on - strand, within PGA1_c20340at 2114.009 kb on - strand, within PGA1_c20340at 2114.140 kb on - strand, within PGA1_c20340at 2115.024 kb on + strandat 2115.106 kb on - strandat 2115.196 kb on - strandat 2115.196 kb on - strandat 2115.196 kb on - strandat 2115.196 kb on - strandat 2115.196 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.625 mM
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2,113,634 + -1.0
2,113,668 + +1.3
2,113,676 - +1.0
2,113,724 + +0.8
2,113,743 - -2.9
2,113,975 + PGA1_c20340 0.16 +0.3
2,114,002 - PGA1_c20340 0.18 -1.7
2,114,002 - PGA1_c20340 0.18 -2.2
2,114,002 - PGA1_c20340 0.18 -1.7
2,114,002 - PGA1_c20340 0.18 -2.2
2,114,002 - PGA1_c20340 0.18 -1.0
2,114,009 - PGA1_c20340 0.19 -1.2
2,114,140 - PGA1_c20340 0.30 -1.7
2,115,024 + -1.4
2,115,106 - -0.4
2,115,196 - -0.8
2,115,196 - -1.0
2,115,196 - -1.2
2,115,196 - -0.0
2,115,196 - -0.4

Or see this region's nucleotide sequence