Experiment: L-Proline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1917 and HP15_1918 overlap by 4 nucleotides HP15_1918 and HP15_1919 overlap by 1 nucleotides
HP15_1917: HP15_1917 - glycosyl transferase, family 2, at 2,032,336 to 2,033,511
_1917
HP15_1918: HP15_1918 - PEP-CTERM system-associated, FemAB-related protein, at 2,033,508 to 2,034,569
_1918
HP15_1919: HP15_1919 - protein involved in cellulose biosynthesis (CelD)-like protein, at 2,034,569 to 2,035,693
_1919
Position (kb)
2033
2034
2035 Strain fitness (log2 ratio)
-1
0
1
2 at 2032.509 kb on + strand, within HP15_1917 at 2032.517 kb on - strand, within HP15_1917 at 2032.517 kb on - strand, within HP15_1917 at 2032.693 kb on - strand, within HP15_1917 at 2033.160 kb on - strand, within HP15_1917 at 2033.210 kb on - strand, within HP15_1917 at 2033.380 kb on + strand, within HP15_1917 at 2033.389 kb on - strand, within HP15_1917 at 2033.389 kb on - strand, within HP15_1917 at 2033.685 kb on - strand, within HP15_1918 at 2033.876 kb on - strand, within HP15_1918 at 2033.877 kb on + strand, within HP15_1918 at 2033.936 kb on + strand, within HP15_1918 at 2033.944 kb on - strand, within HP15_1918 at 2034.036 kb on - strand, within HP15_1918 at 2034.176 kb on - strand, within HP15_1918 at 2034.426 kb on + strand, within HP15_1918 at 2034.434 kb on - strand, within HP15_1918 at 2034.513 kb on + strand at 2034.526 kb on + strand at 2034.628 kb on + strand at 2034.628 kb on + strand at 2034.632 kb on + strand at 2034.634 kb on + strand at 2034.636 kb on - strand at 2034.644 kb on + strand at 2034.932 kb on + strand, within HP15_1919 at 2034.940 kb on - strand, within HP15_1919 at 2035.144 kb on + strand, within HP15_1919 at 2035.154 kb on + strand, within HP15_1919 at 2035.197 kb on - strand, within HP15_1919 at 2035.386 kb on - strand, within HP15_1919 at 2035.388 kb on + strand, within HP15_1919 at 2035.480 kb on + strand, within HP15_1919 at 2035.488 kb on - strand, within HP15_1919
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline as (N) remove 2,032,509 + HP15_1917 0.15 -0.8 2,032,517 - HP15_1917 0.15 +0.2 2,032,517 - HP15_1917 0.15 +0.6 2,032,693 - HP15_1917 0.30 +0.1 2,033,160 - HP15_1917 0.70 -0.3 2,033,210 - HP15_1917 0.74 -0.8 2,033,380 + HP15_1917 0.89 +0.5 2,033,389 - HP15_1917 0.90 -0.0 2,033,389 - HP15_1917 0.90 +0.3 2,033,685 - HP15_1918 0.17 +0.2 2,033,876 - HP15_1918 0.35 +1.0 2,033,877 + HP15_1918 0.35 +0.0 2,033,936 + HP15_1918 0.40 +0.1 2,033,944 - HP15_1918 0.41 -0.2 2,034,036 - HP15_1918 0.50 +0.5 2,034,176 - HP15_1918 0.63 +1.9 2,034,426 + HP15_1918 0.86 +0.5 2,034,434 - HP15_1918 0.87 +1.2 2,034,513 + -0.3 2,034,526 + +0.3 2,034,628 + -0.2 2,034,628 + +0.0 2,034,632 + -0.8 2,034,634 + +0.9 2,034,636 - +0.3 2,034,644 + +1.4 2,034,932 + HP15_1919 0.32 -1.0 2,034,940 - HP15_1919 0.33 +0.5 2,035,144 + HP15_1919 0.51 -0.6 2,035,154 + HP15_1919 0.52 -0.8 2,035,197 - HP15_1919 0.56 +1.8 2,035,386 - HP15_1919 0.73 -0.2 2,035,388 + HP15_1919 0.73 -0.0 2,035,480 + HP15_1919 0.81 -0.7 2,035,488 - HP15_1919 0.82 +0.1
Or see this region's nucleotide sequence