Strain Fitness in Marinobacter adhaerens HP15 around HP15_1918

Experiment: L-Proline as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1917 and HP15_1918 overlap by 4 nucleotidesHP15_1918 and HP15_1919 overlap by 1 nucleotides HP15_1917: HP15_1917 - glycosyl transferase, family 2, at 2,032,336 to 2,033,511 _1917 HP15_1918: HP15_1918 - PEP-CTERM system-associated, FemAB-related protein, at 2,033,508 to 2,034,569 _1918 HP15_1919: HP15_1919 - protein involved in cellulose biosynthesis (CelD)-like protein, at 2,034,569 to 2,035,693 _1919 Position (kb) 2033 2034 2035Strain fitness (log2 ratio) -1 0 1 2at 2032.509 kb on + strand, within HP15_1917at 2032.517 kb on - strand, within HP15_1917at 2032.517 kb on - strand, within HP15_1917at 2032.693 kb on - strand, within HP15_1917at 2033.160 kb on - strand, within HP15_1917at 2033.210 kb on - strand, within HP15_1917at 2033.380 kb on + strand, within HP15_1917at 2033.389 kb on - strand, within HP15_1917at 2033.389 kb on - strand, within HP15_1917at 2033.685 kb on - strand, within HP15_1918at 2033.876 kb on - strand, within HP15_1918at 2033.877 kb on + strand, within HP15_1918at 2033.936 kb on + strand, within HP15_1918at 2033.944 kb on - strand, within HP15_1918at 2034.036 kb on - strand, within HP15_1918at 2034.176 kb on - strand, within HP15_1918at 2034.426 kb on + strand, within HP15_1918at 2034.434 kb on - strand, within HP15_1918at 2034.513 kb on + strandat 2034.526 kb on + strandat 2034.628 kb on + strandat 2034.628 kb on + strandat 2034.632 kb on + strandat 2034.634 kb on + strandat 2034.636 kb on - strandat 2034.644 kb on + strandat 2034.932 kb on + strand, within HP15_1919at 2034.940 kb on - strand, within HP15_1919at 2035.144 kb on + strand, within HP15_1919at 2035.154 kb on + strand, within HP15_1919at 2035.197 kb on - strand, within HP15_1919at 2035.386 kb on - strand, within HP15_1919at 2035.388 kb on + strand, within HP15_1919at 2035.480 kb on + strand, within HP15_1919at 2035.488 kb on - strand, within HP15_1919

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline as (N)
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2,032,509 + HP15_1917 0.15 -0.8
2,032,517 - HP15_1917 0.15 +0.2
2,032,517 - HP15_1917 0.15 +0.6
2,032,693 - HP15_1917 0.30 +0.1
2,033,160 - HP15_1917 0.70 -0.3
2,033,210 - HP15_1917 0.74 -0.8
2,033,380 + HP15_1917 0.89 +0.5
2,033,389 - HP15_1917 0.90 -0.0
2,033,389 - HP15_1917 0.90 +0.3
2,033,685 - HP15_1918 0.17 +0.2
2,033,876 - HP15_1918 0.35 +1.0
2,033,877 + HP15_1918 0.35 +0.0
2,033,936 + HP15_1918 0.40 +0.1
2,033,944 - HP15_1918 0.41 -0.2
2,034,036 - HP15_1918 0.50 +0.5
2,034,176 - HP15_1918 0.63 +1.9
2,034,426 + HP15_1918 0.86 +0.5
2,034,434 - HP15_1918 0.87 +1.2
2,034,513 + -0.3
2,034,526 + +0.3
2,034,628 + -0.2
2,034,628 + +0.0
2,034,632 + -0.8
2,034,634 + +0.9
2,034,636 - +0.3
2,034,644 + +1.4
2,034,932 + HP15_1919 0.32 -1.0
2,034,940 - HP15_1919 0.33 +0.5
2,035,144 + HP15_1919 0.51 -0.6
2,035,154 + HP15_1919 0.52 -0.8
2,035,197 - HP15_1919 0.56 +1.8
2,035,386 - HP15_1919 0.73 -0.2
2,035,388 + HP15_1919 0.73 -0.0
2,035,480 + HP15_1919 0.81 -0.7
2,035,488 - HP15_1919 0.82 +0.1

Or see this region's nucleotide sequence