Strain Fitness in Marinobacter adhaerens HP15 around HP15_1730

Experiment: L-Proline as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1728 and HP15_1729 overlap by 1 nucleotidesHP15_1729 and HP15_1730 are separated by 16 nucleotidesHP15_1730 and HP15_1731 are separated by 135 nucleotidesHP15_1731 and HP15_1732 overlap by 8 nucleotides HP15_1728: HP15_1728 - phosphonate ABC transporter, periplasmic phosphonate-binding protein, at 1,828,327 to 1,829,175 _1728 HP15_1729: HP15_1729 - phosphonate ABC transporter, ATPase subunit, at 1,829,175 to 1,829,825 _1729 HP15_1730: HP15_1730 - binding-protein-dependent transport systems inner membrane component, at 1,829,842 to 1,831,308 _1730 HP15_1731: HP15_1731 - conserved hypothetical protein, at 1,831,444 to 1,832,049 _1731 HP15_1732: HP15_1732 - conserved hypothetical protein, at 1,832,042 to 1,832,353 _1732 Position (kb) 1829 1830 1831 1832Strain fitness (log2 ratio) -1 0 1 2at 1828.873 kb on + strand, within HP15_1728at 1829.027 kb on + strand, within HP15_1728at 1829.027 kb on + strand, within HP15_1728at 1829.079 kb on + strand, within HP15_1728at 1829.087 kb on - strand, within HP15_1728at 1829.097 kb on + strandat 1829.206 kb on - strandat 1829.248 kb on + strand, within HP15_1729at 1829.368 kb on - strand, within HP15_1729at 1829.396 kb on - strand, within HP15_1729at 1829.431 kb on + strand, within HP15_1729at 1829.451 kb on - strand, within HP15_1729at 1829.451 kb on - strand, within HP15_1729at 1829.451 kb on - strand, within HP15_1729at 1829.451 kb on - strand, within HP15_1729at 1829.515 kb on - strand, within HP15_1729at 1829.598 kb on - strand, within HP15_1729at 1829.617 kb on - strand, within HP15_1729at 1829.713 kb on - strand, within HP15_1729at 1829.827 kb on - strandat 1829.841 kb on + strandat 1829.931 kb on + strandat 1830.018 kb on + strand, within HP15_1730at 1830.052 kb on + strand, within HP15_1730at 1830.052 kb on + strand, within HP15_1730at 1830.052 kb on + strand, within HP15_1730at 1830.055 kb on - strand, within HP15_1730at 1830.060 kb on - strand, within HP15_1730at 1830.060 kb on - strand, within HP15_1730at 1830.378 kb on - strand, within HP15_1730at 1830.468 kb on + strand, within HP15_1730at 1830.539 kb on + strand, within HP15_1730at 1830.612 kb on - strand, within HP15_1730at 1830.807 kb on - strand, within HP15_1730at 1830.909 kb on + strand, within HP15_1730at 1830.909 kb on + strand, within HP15_1730at 1830.917 kb on - strand, within HP15_1730at 1830.917 kb on - strand, within HP15_1730at 1830.917 kb on - strand, within HP15_1730at 1830.920 kb on + strand, within HP15_1730at 1830.928 kb on - strand, within HP15_1730at 1830.961 kb on + strand, within HP15_1730at 1831.148 kb on + strand, within HP15_1730at 1831.317 kb on - strandat 1831.390 kb on - strandat 1831.840 kb on - strand, within HP15_1731at 1831.924 kb on - strand, within HP15_1731at 1831.975 kb on - strand, within HP15_1731at 1832.106 kb on + strand, within HP15_1732at 1832.183 kb on + strand, within HP15_1732at 1832.191 kb on - strand, within HP15_1732at 1832.242 kb on + strand, within HP15_1732

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline as (N)
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1,828,873 + HP15_1728 0.64 -0.0
1,829,027 + HP15_1728 0.82 +1.2
1,829,027 + HP15_1728 0.82 -0.4
1,829,079 + HP15_1728 0.89 +0.5
1,829,087 - HP15_1728 0.90 -0.1
1,829,097 + +1.2
1,829,206 - -0.1
1,829,248 + HP15_1729 0.11 -0.2
1,829,368 - HP15_1729 0.30 +0.4
1,829,396 - HP15_1729 0.34 +1.2
1,829,431 + HP15_1729 0.39 -0.3
1,829,451 - HP15_1729 0.42 +0.8
1,829,451 - HP15_1729 0.42 -0.5
1,829,451 - HP15_1729 0.42 +0.6
1,829,451 - HP15_1729 0.42 -0.3
1,829,515 - HP15_1729 0.52 +1.0
1,829,598 - HP15_1729 0.65 +0.6
1,829,617 - HP15_1729 0.68 -0.0
1,829,713 - HP15_1729 0.83 -0.4
1,829,827 - -0.7
1,829,841 + -0.7
1,829,931 + -0.2
1,830,018 + HP15_1730 0.12 -0.9
1,830,052 + HP15_1730 0.14 +0.5
1,830,052 + HP15_1730 0.14 +1.0
1,830,052 + HP15_1730 0.14 -0.2
1,830,055 - HP15_1730 0.15 +1.6
1,830,060 - HP15_1730 0.15 +0.6
1,830,060 - HP15_1730 0.15 +0.9
1,830,378 - HP15_1730 0.37 +0.2
1,830,468 + HP15_1730 0.43 -0.1
1,830,539 + HP15_1730 0.48 -0.1
1,830,612 - HP15_1730 0.52 +1.2
1,830,807 - HP15_1730 0.66 -0.1
1,830,909 + HP15_1730 0.73 +0.4
1,830,909 + HP15_1730 0.73 +0.9
1,830,917 - HP15_1730 0.73 +0.1
1,830,917 - HP15_1730 0.73 +2.4
1,830,917 - HP15_1730 0.73 -0.2
1,830,920 + HP15_1730 0.73 +1.3
1,830,928 - HP15_1730 0.74 +0.5
1,830,961 + HP15_1730 0.76 -0.2
1,831,148 + HP15_1730 0.89 +1.1
1,831,317 - +0.6
1,831,390 - -1.2
1,831,840 - HP15_1731 0.65 -0.0
1,831,924 - HP15_1731 0.79 -0.2
1,831,975 - HP15_1731 0.88 +1.2
1,832,106 + HP15_1732 0.21 -0.3
1,832,183 + HP15_1732 0.45 +0.8
1,832,191 - HP15_1732 0.48 -0.0
1,832,242 + HP15_1732 0.64 +0.8

Or see this region's nucleotide sequence