Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4110

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4109 and engB are separated by 977 nucleotidesengB and Shewana3_4111 are separated by 169 nucleotidesShewana3_4111 and Shewana3_4112 are separated by 108 nucleotides Shewana3_4109: Shewana3_4109 - DNA polymerase I (RefSeq), at 4,931,315 to 4,934,083 _4109 Shewana3_4110: engB - ribosome biogenesis GTP-binding protein YsxC (RefSeq), at 4,935,061 to 4,935,720 engB Shewana3_4111: Shewana3_4111 - cytochrome c, class I (RefSeq), at 4,935,890 to 4,936,513 _4111 Shewana3_4112: Shewana3_4112 - hypothetical protein (RefSeq), at 4,936,622 to 4,936,915 _4112 Position (kb) 4935 4936Strain fitness (log2 ratio) -3 -2 -1 0 1at 4934.223 kb on - strandat 4934.363 kb on + strandat 4934.373 kb on + strandat 4934.393 kb on - strandat 4934.639 kb on + strandat 4934.663 kb on + strandat 4935.108 kb on + strandat 4935.108 kb on - strandat 4935.805 kb on - strandat 4935.844 kb on + strandat 4935.853 kb on + strandat 4935.858 kb on + strandat 4935.942 kb on - strandat 4936.568 kb on + strandat 4936.637 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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4,934,223 - +0.2
4,934,363 + -3.2
4,934,373 + -0.1
4,934,393 - +0.1
4,934,639 + -1.2
4,934,663 + +0.7
4,935,108 + +0.1
4,935,108 - +1.4
4,935,805 - -0.3
4,935,844 + -0.8
4,935,853 + -1.7
4,935,858 + +0.2
4,935,942 - -0.4
4,936,568 + -0.1
4,936,637 - +0.4

Or see this region's nucleotide sequence