Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ompR and envZ are separated by 39 nucleotides envZ and Shewana3_4019 are separated by 116 nucleotides
Shewana3_4017: ompR - osmolarity response regulator (RefSeq), at 4,826,687 to 4,827,412
ompR
Shewana3_4018: envZ - osmolarity sensor protein (RefSeq), at 4,827,452 to 4,828,768
envZ
Shewana3_4019: Shewana3_4019 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 4,828,885 to 4,830,861
_4019
Position (kb) 4827
4828
4829 Strain fitness (log2 ratio) -1
0
1 at 4826.765 kb on + strand, within ompR at 4826.772 kb on + strand, within ompR at 4826.772 kb on + strand, within ompR at 4826.772 kb on + strand, within ompR at 4826.772 kb on + strand, within ompR at 4826.799 kb on - strand, within ompR at 4826.804 kb on - strand, within ompR at 4827.020 kb on - strand, within ompR at 4827.034 kb on + strand, within ompR at 4827.042 kb on - strand, within ompR at 4827.042 kb on - strand, within ompR at 4827.076 kb on - strand, within ompR at 4827.135 kb on + strand, within ompR at 4827.180 kb on - strand, within ompR at 4827.208 kb on - strand, within ompR at 4827.269 kb on - strand, within ompR at 4827.464 kb on - strand at 4827.512 kb on - strand at 4827.512 kb on - strand at 4827.512 kb on - strand at 4827.574 kb on - strand at 4827.670 kb on - strand, within envZ at 4827.848 kb on + strand, within envZ at 4828.006 kb on + strand, within envZ at 4828.014 kb on - strand, within envZ at 4828.107 kb on - strand, within envZ at 4828.136 kb on - strand, within envZ at 4828.330 kb on - strand, within envZ at 4828.381 kb on + strand, within envZ at 4828.389 kb on - strand, within envZ at 4828.389 kb on - strand, within envZ at 4828.655 kb on + strand at 4828.655 kb on + strand at 4828.663 kb on - strand at 4828.835 kb on + strand at 4828.944 kb on + strand at 4828.962 kb on + strand at 4829.118 kb on + strand, within Shewana3_4019 at 4829.146 kb on - strand, within Shewana3_4019 at 4829.257 kb on - strand, within Shewana3_4019 at 4829.257 kb on - strand, within Shewana3_4019 at 4829.260 kb on + strand, within Shewana3_4019 at 4829.570 kb on + strand, within Shewana3_4019 at 4829.588 kb on - strand, within Shewana3_4019
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 4,826,765 + ompR Shewana3_4017 0.11 +0.3 4,826,772 + ompR Shewana3_4017 0.12 +0.1 4,826,772 + ompR Shewana3_4017 0.12 +0.8 4,826,772 + ompR Shewana3_4017 0.12 +0.2 4,826,772 + ompR Shewana3_4017 0.12 +0.5 4,826,799 - ompR Shewana3_4017 0.15 +1.5 4,826,804 - ompR Shewana3_4017 0.16 +1.3 4,827,020 - ompR Shewana3_4017 0.46 -1.3 4,827,034 + ompR Shewana3_4017 0.48 +0.8 4,827,042 - ompR Shewana3_4017 0.49 -1.3 4,827,042 - ompR Shewana3_4017 0.49 +0.5 4,827,076 - ompR Shewana3_4017 0.54 +0.5 4,827,135 + ompR Shewana3_4017 0.62 +0.4 4,827,180 - ompR Shewana3_4017 0.68 +0.4 4,827,208 - ompR Shewana3_4017 0.72 -1.1 4,827,269 - ompR Shewana3_4017 0.80 -0.9 4,827,464 - +0.5 4,827,512 - -0.8 4,827,512 - +0.8 4,827,512 - -1.4 4,827,574 - -1.3 4,827,670 - envZ Shewana3_4018 0.17 +0.3 4,827,848 + envZ Shewana3_4018 0.30 +0.5 4,828,006 + envZ Shewana3_4018 0.42 +1.4 4,828,014 - envZ Shewana3_4018 0.43 +0.1 4,828,107 - envZ Shewana3_4018 0.50 -1.1 4,828,136 - envZ Shewana3_4018 0.52 -1.0 4,828,330 - envZ Shewana3_4018 0.67 +0.6 4,828,381 + envZ Shewana3_4018 0.71 +0.5 4,828,389 - envZ Shewana3_4018 0.71 +1.1 4,828,389 - envZ Shewana3_4018 0.71 +0.3 4,828,655 + +0.0 4,828,655 + +0.3 4,828,663 - +0.4 4,828,835 + -0.7 4,828,944 + +0.8 4,828,962 + +0.3 4,829,118 + Shewana3_4019 0.12 -1.1 4,829,146 - Shewana3_4019 0.13 +0.3 4,829,257 - Shewana3_4019 0.19 +0.3 4,829,257 - Shewana3_4019 0.19 -1.0 4,829,260 + Shewana3_4019 0.19 +0.7 4,829,570 + Shewana3_4019 0.35 -1.6 4,829,588 - Shewana3_4019 0.36 +0.1
Or see this region's nucleotide sequence