Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3598 and Shewana3_3599 are separated by 132 nucleotides Shewana3_3599 and Shewana3_3600 are separated by 16 nucleotides Shewana3_3600 and Shewana3_3601 are separated by 8 nucleotides
Shewana3_3598: Shewana3_3598 - LysR family transcriptional regulator (RefSeq), at 4,321,829 to 4,322,710
_3598
Shewana3_3599: Shewana3_3599 - aldo/keto reductase (RefSeq), at 4,322,843 to 4,323,685
_3599
Shewana3_3600: Shewana3_3600 - HAD family hydrolase (RefSeq), at 4,323,702 to 4,324,322
_3600
Shewana3_3601: Shewana3_3601 - hypothetical protein (RefSeq), at 4,324,331 to 4,325,320
_3601
Position (kb) 4323
4324
4325 Strain fitness (log2 ratio) -2
-1
0
1 at 4322.977 kb on - strand, within Shewana3_3599 at 4323.034 kb on - strand, within Shewana3_3599 at 4323.044 kb on - strand, within Shewana3_3599 at 4323.487 kb on - strand, within Shewana3_3599 at 4323.964 kb on - strand, within Shewana3_3600 at 4324.421 kb on + strand at 4324.556 kb on - strand, within Shewana3_3601 at 4324.556 kb on - strand, within Shewana3_3601 at 4324.574 kb on - strand, within Shewana3_3601 at 4324.748 kb on + strand, within Shewana3_3601 at 4324.782 kb on + strand, within Shewana3_3601 at 4324.816 kb on + strand, within Shewana3_3601 at 4324.821 kb on + strand, within Shewana3_3601 at 4324.883 kb on + strand, within Shewana3_3601 at 4324.913 kb on - strand, within Shewana3_3601 at 4325.068 kb on + strand, within Shewana3_3601 at 4325.273 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 4,322,977 - Shewana3_3599 0.16 +0.7 4,323,034 - Shewana3_3599 0.23 -1.8 4,323,044 - Shewana3_3599 0.24 -1.9 4,323,487 - Shewana3_3599 0.76 -0.6 4,323,964 - Shewana3_3600 0.42 +0.4 4,324,421 + +0.3 4,324,556 - Shewana3_3601 0.23 -0.6 4,324,556 - Shewana3_3601 0.23 +1.4 4,324,574 - Shewana3_3601 0.25 +0.2 4,324,748 + Shewana3_3601 0.42 +0.5 4,324,782 + Shewana3_3601 0.46 -0.6 4,324,816 + Shewana3_3601 0.49 +0.1 4,324,821 + Shewana3_3601 0.49 +0.3 4,324,883 + Shewana3_3601 0.56 +0.5 4,324,913 - Shewana3_3601 0.59 -0.1 4,325,068 + Shewana3_3601 0.74 +0.4 4,325,273 + +0.6
Or see this region's nucleotide sequence