Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3072

Experiment: Fumarate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_3071 and Shewana3_3072 are separated by 86 nucleotidesShewana3_3072 and Shewana3_3073 are separated by 470 nucleotides Shewana3_3071: Shewana3_3071 - glutamate-1-semialdehyde aminotransferase (RefSeq), at 3,683,258 to 3,684,550 _3071 Shewana3_3072: Shewana3_3072 - hypothetical protein (RefSeq), at 3,684,637 to 3,684,834 _3072 Shewana3_3073: Shewana3_3073 - citrate transporter (RefSeq), at 3,685,305 to 3,686,615 _3073 Position (kb) 3684 3685Strain fitness (log2 ratio) -1 0 1at 3684.557 kb on + strandat 3684.732 kb on + strand, within Shewana3_3072at 3685.280 kb on - strandat 3685.501 kb on - strand, within Shewana3_3073

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
remove
3,684,557 + -1.0
3,684,732 + Shewana3_3072 0.48 +0.2
3,685,280 - -0.7
3,685,501 - Shewana3_3073 0.15 +0.3

Or see this region's nucleotide sequence