Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3040

Experiment: Fumarate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_3038 and thyA are separated by 118 nucleotidesthyA and Shewana3_3040 overlap by 1 nucleotidesShewana3_3040 and Shewana3_3041 are separated by 45 nucleotidesShewana3_3041 and Shewana3_3042 are separated by 58 nucleotides Shewana3_3038: Shewana3_3038 - Na+/H+ antiporter NhaA (RefSeq), at 3,641,862 to 3,643,031 _3038 Shewana3_3039: thyA - thymidylate synthase (RefSeq), at 3,643,150 to 3,643,944 thyA Shewana3_3040: Shewana3_3040 - prolipoprotein diacylglyceryl transferase (RefSeq), at 3,643,944 to 3,644,750 _3040 Shewana3_3041: Shewana3_3041 - hypothetical protein (RefSeq), at 3,644,796 to 3,645,596 _3041 Shewana3_3042: Shewana3_3042 - phosphoenolpyruvate-protein phosphotransferase PtsP (RefSeq), at 3,645,655 to 3,647,889 _3042 Position (kb) 3643 3644 3645Strain fitness (log2 ratio) -3 -2 -1 0 1at 3644.863 kb on - strandat 3644.874 kb on - strandat 3644.959 kb on - strand, within Shewana3_3041at 3645.003 kb on - strand, within Shewana3_3041at 3645.010 kb on - strand, within Shewana3_3041at 3645.263 kb on - strand, within Shewana3_3041at 3645.463 kb on - strand, within Shewana3_3041at 3645.478 kb on + strand, within Shewana3_3041at 3645.486 kb on - strand, within Shewana3_3041at 3645.600 kb on + strandat 3645.600 kb on + strandat 3645.600 kb on + strandat 3645.608 kb on - strandat 3645.633 kb on - strandat 3645.682 kb on - strandat 3645.740 kb on - strandat 3645.742 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
remove
3,644,863 - -1.1
3,644,874 - -1.4
3,644,959 - Shewana3_3041 0.20 -1.8
3,645,003 - Shewana3_3041 0.26 -0.8
3,645,010 - Shewana3_3041 0.27 -1.2
3,645,263 - Shewana3_3041 0.58 -2.9
3,645,463 - Shewana3_3041 0.83 -0.3
3,645,478 + Shewana3_3041 0.85 -2.0
3,645,486 - Shewana3_3041 0.86 -0.3
3,645,600 + -1.1
3,645,600 + -0.8
3,645,600 + -2.3
3,645,608 - +0.0
3,645,633 - -1.0
3,645,682 - +0.7
3,645,740 - -1.9
3,645,742 - +1.0

Or see this region's nucleotide sequence